Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007835_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 83.53 | 87.72 |
| KXG34492 | Sorghum | nucleus | 87.15 | 85.6 |
| Os07t0173200-02 | Rice | cytosol | 72.65 | 82.58 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 23.72 | 61.54 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 48.11 | 59.84 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 47.94 | 59.51 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 42.67 | 49.62 |
| KRH35520 | Soybean | cytosol | 42.83 | 49.06 |
| KRG91301 | Soybean | cytosol | 42.34 | 49.05 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 40.36 | 46.67 |
| PGSC0003DMT400077344 | Potato | nucleus | 39.04 | 46.11 |
| Solyc09g076050.2.1 | Tomato | nucleus | 39.04 | 46.11 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 40.2 | 45.69 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 39.21 | 45.59 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 39.87 | 45.49 |
| AT4G14900.1 | Thale cress | nucleus | 38.55 | 43.98 |
| CDY38318 | Canola | nucleus | 30.97 | 35.4 |
| Zm00001d005107_P001 | Maize | cytosol | 24.38 | 27.72 |
| Zm00001d019890_P001 | Maize | nucleus | 24.05 | 27.34 |
| Zm00001d019892_P001 | Maize | nucleus | 17.46 | 26.17 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 27.18 | 25.82 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 23.39 | 22.79 |
| Zm00001d006752_P003 | Maize | nucleus | 23.39 | 21.68 |
| Zm00001d028173_P002 | Maize | plastid | 16.64 | 19.73 |
Protein Annotations
| EnsemblPlants:Zm00001d018911_P001 | EnsemblPlants:Zm00001d018911_T001 | EnsemblPlantsGene:Zm00001d018911 | EntrezGene:103631993 | GO:GO:0000003 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida |
| ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF11 | PFAM:PF07899 | ProteinID:ONM51612.1 | SEG:seg |
| UniParc:UPI000220AC48 | UniProt:A0A1D6HT97 | MapMan:35.1 | : | : | : |
Description
FRIGIDA-like protein 4a
Coordinates
chr7:-:8985941..8989559
Molecular Weight (calculated)
64878.5 Da
IEP (calculated)
8.728
GRAVY (calculated)
-0.391
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPAAAAAA APPPAAKEKE KDAEEAPVTG DMVSAGFAEL ERQQQLLATC TRLYQQLSDH FGSLERGLAA RSDALRVRRR AFDARTHRAL DSLHRREASI
101: DASVSRALDH LHSISASASA AAAASSKAPA TSDSDSEGLA ESLRALCARM DSAAFLGFVV ARRKEADALR AEMPPALKLC VDPAKFVMDA VADVFPVDRR
201: EVRNPADLAW ACVLILEAAV PALADTDPDI GPARPLVPRA ARDRARGMAR DWKEAAEKKG GVEGAKPPDA HAFLQLVATF AVAEREDRPL YRRIVVSFSW
301: RRQMPRLALT LGLEEQMADI IEELIAKRQQ LDAVNFAYEA GLQEKFPPVP LLKSYLEDSK KTSTAASDNS STSSGQSGSN VNKKEQSALR AVIKCVEDRK
401: LEAEFPLEGL RKQLEELEKA KTEKKKAASS ATSGGSGGPA TKRIRASTGG PMPPAKAGRL TNNACVSSLP APTTLTQSPS HASYANTSPS RTSYANTSPS
501: HASYATVSPT HASYATPSPP HASYATASPY PYDRPVGHGV YCTRSPPVIR EPYVYPAEEV ATVNVGIPMA YSTPPMSYPA APYGGYGNGM PAYTNGMAPA
601: FHQAYYR
101: DASVSRALDH LHSISASASA AAAASSKAPA TSDSDSEGLA ESLRALCARM DSAAFLGFVV ARRKEADALR AEMPPALKLC VDPAKFVMDA VADVFPVDRR
201: EVRNPADLAW ACVLILEAAV PALADTDPDI GPARPLVPRA ARDRARGMAR DWKEAAEKKG GVEGAKPPDA HAFLQLVATF AVAEREDRPL YRRIVVSFSW
301: RRQMPRLALT LGLEEQMADI IEELIAKRQQ LDAVNFAYEA GLQEKFPPVP LLKSYLEDSK KTSTAASDNS STSSGQSGSN VNKKEQSALR AVIKCVEDRK
401: LEAEFPLEGL RKQLEELEKA KTEKKKAASS ATSGGSGGPA TKRIRASTGG PMPPAKAGRL TNNACVSSLP APTTLTQSPS HASYANTSPS RTSYANTSPS
501: HASYATVSPT HASYATPSPP HASYATASPY PYDRPVGHGV YCTRSPPVIR EPYVYPAEEV ATVNVGIPMA YSTPPMSYPA APYGGYGNGM PAYTNGMAPA
601: FHQAYYR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.