Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010282_P001 | |
| Zm00001d038190_P012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | Zm00001d010282_P001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | Zm00001d038190_P012 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01849 | Sorghum | nucleus | 85.08 | 95.8 |
| Os01t0876800-00 | Rice | nucleus | 95.25 | 93.67 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 91.86 | 91.55 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 91.53 | 91.22 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 91.19 | 90.57 |
| KRH75298 | Soybean | cytosol, nucleus | 27.46 | 81.82 |
| KRH13261 | Soybean | cytosol | 33.22 | 79.03 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 88.14 | 76.47 |
| GSMUA_Achr10P... | Banana | nucleus | 64.75 | 70.48 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 63.39 | 69.52 |
| KRH40033 | Soybean | nucleus | 63.39 | 68.75 |
| KRH23771 | Soybean | nucleus | 62.71 | 68.01 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 58.98 | 66.41 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 60.68 | 66.3 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 57.29 | 65.25 |
| PGSC0003DMT400008944 | Potato | nucleus | 58.31 | 65.15 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 55.93 | 63.22 |
| CDY69197 | Canola | nucleus | 38.98 | 51.11 |
| Bra024547.1-P | Field mustard | nucleus | 40.0 | 49.37 |
| CDY04769 | Canola | nucleus | 39.32 | 48.95 |
| CDX73279 | Canola | cytosol | 38.64 | 47.11 |
| Bra012350.1-P | Field mustard | nucleus | 39.32 | 46.59 |
| CDY25759 | Canola | nucleus | 38.98 | 46.18 |
| AT1G33470.1 | Thale cress | cytosol | 38.31 | 46.12 |
| KRH62942 | Soybean | mitochondrion | 31.53 | 45.59 |
| Zm00001d052212_P001 | Maize | nucleus | 23.39 | 42.86 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 35.93 | 37.99 |
| Bra010203.1-P | Field mustard | nucleus | 38.98 | 37.7 |
| AT1G22910.3 | Thale cress | nucleus | 42.71 | 36.31 |
| Zm00001d042042_P001 | Maize | nucleus | 41.69 | 36.18 |
| CDY67263 | Canola | nucleus | 40.0 | 35.98 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 31.86 | 33.69 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 32.54 | 32.32 |
| Zm00001d046716_P001 | Maize | nucleus | 36.61 | 30.0 |
| Zm00001d018103_P002 | Maize | plasma membrane | 31.19 | 28.93 |
| Zm00001d017829_P002 | Maize | plastid | 32.88 | 28.12 |
| CDY13339 | Canola | mitochondrion | 15.93 | 27.98 |
| CDY21399 | Canola | mitochondrion | 13.56 | 27.59 |
| Zm00001d037209_P001 | Maize | plastid | 30.51 | 27.11 |
| Zm00001d051627_P002 | Maize | plastid | 33.22 | 26.63 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 55.25 | 24.44 |
| Zm00001d016349_P002 | Maize | nucleus | 20.68 | 15.89 |
| Zm00001d046190_P001 | Maize | extracellular | 21.69 | 15.31 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 21.36 | 15.25 |
| Zm00001d030579_P001 | Maize | mitochondrion | 17.97 | 15.23 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 18.31 | 14.1 |
| Zm00001d034200_P001 | Maize | nucleus | 8.14 | 14.04 |
| Zm00001d032739_P001 | Maize | nucleus | 21.02 | 14.0 |
| Zm00001d034201_P001 | Maize | nucleus | 11.86 | 13.94 |
| Zm00001d011885_P008 | Maize | cytosol | 16.95 | 13.89 |
| Zm00001d019079_P001 | Maize | cytosol | 21.02 | 13.84 |
| Zm00001d007839_P001 | Maize | cytosol | 17.29 | 13.78 |
| Zm00001d044469_P003 | Maize | nucleus | 20.68 | 13.65 |
| Zm00001d011336_P002 | Maize | nucleus | 20.68 | 13.62 |
| Zm00001d007772_P001 | Maize | nucleus | 20.68 | 13.59 |
| Zm00001d019084_P002 | Maize | nucleus | 20.0 | 13.0 |
| Zm00001d014058_P002 | Maize | plastid | 21.02 | 12.86 |
| Zm00001d006704_P002 | Maize | nucleus | 20.68 | 12.6 |
| Zm00001d018730_P001 | Maize | nucleus | 15.59 | 12.3 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 18.64 | 12.11 |
| Zm00001d053572_P002 | Maize | cytosol | 21.36 | 11.48 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 21.02 | 11.46 |
| Zm00001d019086_P001 | Maize | nucleus | 20.0 | 11.09 |
| Zm00001d002141_P006 | Maize | nucleus | 18.98 | 10.75 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 18.64 | 10.56 |
| Zm00001d042133_P003 | Maize | cytosol | 11.86 | 8.79 |
Protein Annotations
| EntrezGene:103650932 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6N5Q8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM35943.1 |
| ProteinID:ONM35946.1 | ProteinID:ONM35954.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000221805E | EnsemblPlantsGene:Zm00001d042641 |
| EnsemblPlants:Zm00001d042641_P001 | EnsemblPlants:Zm00001d042641_T001 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr3:-:175041489..175047449
Molecular Weight (calculated)
31782.3 Da
IEP (calculated)
9.045
GRAVY (calculated)
-0.304
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSVMGQF GDTTYTKVFV GGLAWETQKE TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFRDPDAA MRACVDPAPV IDGRRANCNL ASLGVQRSRP
101: PTPQHGGARN FRVMKSFNQQ AGIQGGLGAA FPSHATFPHY AIPQGLPFHV YGYSPYTPDY GYPTNFYNIY GGAQYPFYGG ATAGMVTGTS PFYPYFQFGQ
201: SGNTTTNYTS GQGYNLQQYP QMFHFSTVSS TAAAVTGFAQ QYGGPLSLAA SPQAQAGMTM ALTAPTLPTP TQAAHPYRLI PSHFAVSAAP EQPLA
101: PTPQHGGARN FRVMKSFNQQ AGIQGGLGAA FPSHATFPHY AIPQGLPFHV YGYSPYTPDY GYPTNFYNIY GGAQYPFYGG ATAGMVTGTS PFYPYFQFGQ
201: SGNTTTNYTS GQGYNLQQYP QMFHFSTVSS TAAAVTGFAQ QYGGPLSLAA SPQAQAGMTM ALTAPTLPTP TQAAHPYRLI PSHFAVSAAP EQPLA
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.