Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG21997 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | KXG21997 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042641_P001 | Maize | nucleus | 95.8 | 85.08 |
| KRH75298 | Soybean | cytosol, nucleus | 30.92 | 81.82 |
| Os01t0876800-00 | Rice | nucleus | 93.13 | 81.33 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 90.08 | 79.73 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 89.69 | 79.39 |
| KRH13261 | Soybean | cytosol | 37.4 | 79.03 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 89.31 | 78.79 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 92.37 | 71.18 |
| GSMUA_Achr10P... | Banana | nucleus | 72.52 | 70.11 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 69.47 | 67.66 |
| KRH40033 | Soybean | nucleus | 69.08 | 66.54 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 66.41 | 66.41 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 67.94 | 65.93 |
| KRH23771 | Soybean | nucleus | 68.32 | 65.81 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 63.74 | 64.48 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 62.6 | 62.84 |
| PGSC0003DMT400008944 | Potato | nucleus | 62.98 | 62.5 |
| CDY69197 | Canola | nucleus | 43.89 | 51.11 |
| Bra024547.1-P | Field mustard | nucleus | 45.04 | 49.37 |
| CDY04769 | Canola | nucleus | 44.27 | 48.95 |
| CDX73279 | Canola | cytosol | 42.75 | 46.28 |
| Bra012350.1-P | Field mustard | nucleus | 43.89 | 46.18 |
| CDY25759 | Canola | nucleus | 43.89 | 46.18 |
| KRH62942 | Soybean | mitochondrion | 35.5 | 45.59 |
| AT1G33470.1 | Thale cress | cytosol | 42.37 | 45.31 |
| EES02078 | Sorghum | nucleus | 49.24 | 38.17 |
| EER90058 | Sorghum | plastid | 40.84 | 37.41 |
| Bra010203.1-P | Field mustard | nucleus | 43.13 | 37.05 |
| CDY67263 | Canola | nucleus | 43.51 | 34.76 |
| AT1G22910.3 | Thale cress | nucleus | 45.8 | 34.58 |
| OQU85520 | Sorghum | nucleus, plastid | 38.17 | 33.9 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 38.17 | 32.26 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 9.54 | 31.65 |
| KXG30724 | Sorghum | plastid | 35.5 | 30.0 |
| CDY21399 | Canola | mitochondrion | 15.27 | 27.59 |
| CDY13339 | Canola | mitochondrion | 17.18 | 26.79 |
| OQU76075 | Sorghum | plastid | 35.11 | 26.06 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 59.16 | 23.24 |
| EES06526 | Sorghum | nucleus | 23.66 | 15.86 |
| EER88542 | Sorghum | nucleus | 24.05 | 15.22 |
| EES01076 | Sorghum | nucleus | 19.85 | 14.9 |
| EER98147 | Sorghum | nucleus | 23.66 | 13.69 |
| EER96020 | Sorghum | nucleus | 23.66 | 13.63 |
| KXG34100 | Sorghum | cytosol | 18.7 | 13.61 |
| EES03272 | Sorghum | nucleus | 22.9 | 13.48 |
| KXG38359 | Sorghum | nucleus | 23.28 | 13.47 |
| EER97452 | Sorghum | nucleus | 23.28 | 12.95 |
| EER95824 | Sorghum | cytosol | 18.7 | 12.86 |
| KXG37469 | Sorghum | cytosol | 13.74 | 11.88 |
| OQU81002 | Sorghum | nucleus | 14.89 | 11.64 |
| KXG30578 | Sorghum | nucleus | 16.03 | 11.29 |
| EES02736 | Sorghum | plastid | 19.85 | 11.21 |
| OQU83904 | Sorghum | nucleus | 18.7 | 10.89 |
| EES12939 | Sorghum | nucleus | 20.99 | 10.44 |
| EES10068 | Sorghum | nucleus | 15.27 | 9.28 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8063122 | UniProt:C5XRD1 | EnsemblPlants:EES01849 | ProteinID:EES01849 |
| ProteinID:EES01849.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3003G375000 | SUPFAM:SSF54928 | unigene:Sbi.20984 |
| UniParc:UPI0001A84FAF | RefSeq:XP_002456729.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:68988981..68994567
Molecular Weight (calculated)
28228.1 Da
IEP (calculated)
9.097
GRAVY (calculated)
-0.299
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSVMGQF GDTTYTKVFV GGLAWETQKE TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFRDPDAA MRACVDPAPV IDGRRANCNL ASLGVQRSRP
101: PTPQHGGARN FRVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHV YGYSPYTPDG YPTNFYSIYG GAQYPFYGGA AAGMVTGTSP FYPYFQFGQS
201: GNTTTNYTSG QGYNLQYPQM FQFSTVSSTA AAVTGFAQQY GGPLSLAASP QAQAVCIPIK QA
101: PTPQHGGARN FRVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHV YGYSPYTPDG YPTNFYSIYG GAQYPFYGGA AAGMVTGTSP FYPYFQFGQS
201: GNTTTNYTSG QGYNLQYPQM FQFSTVSSTA AAVTGFAQQY GGPLSLAASP QAQAVCIPIK QA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.