CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026397_P001	Maize	nucleus, plasma membrane	92.6	93.67
Zm00001d002141_P006	Maize	nucleus	89.94	90.98
Os04t0636900-02	Rice	nucleus	80.46	82.33
HORVU2Hr1G116150.4	Barley	nucleus	61.67	78.5
TraesCS2D01G529100.1	Wheat	nucleus	74.95	77.6
TraesCS2B01G556700.1	Wheat	nucleus	74.57	77.21
TraesCS2A01G526400.1	Wheat	nucleus	74.57	77.21
HORVU2Hr1G116230.1	Barley	nucleus	49.72	64.53
GSMUA_Achr10P...	Banana	nucleus	20.87	47.62
GSMUA_AchrUn_...	Banana	nucleus	34.91	42.89
GSMUA_Achr4P09210_001	Banana	nucleus	32.83	39.14
CDY06947	Canola	nucleus	29.6	36.28
KRG94993	Soybean	nucleus	32.83	36.12
Bra007277.1-P	Field mustard	nucleus	30.55	35.86
CDX72106	Canola	nucleus	30.93	35.82
CDY27186	Canola	nucleus	30.36	35.63
Bra016954.1-P	Field mustard	nucleus	29.6	35.45
CDY57580	Canola	nucleus	29.79	35.44
Solyc01g008970.2.1	Tomato	nucleus	25.24	35.37
KRH66628	Soybean	nucleus	32.26	34.98
CDX76015	Canola	nucleus	20.11	34.75
Bra014667.1-P	Field mustard	nucleus	19.92	34.43
AT3G56860.10	Thale cress	nucleus	31.12	34.31
AT2G41060.3	Thale cress	nucleus	29.22	34.15
VIT_08s0056g00690.t01	Wine grape	nucleus	29.03	33.05
EES02736	Sorghum	plastid	29.03	32.97
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	4.93	32.91
KXG30578	Sorghum	nucleus	23.15	32.8
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	32.07	32.63
EES03272	Sorghum	nucleus	27.51	32.58
KRH73477	Soybean	nucleus	29.98	31.85
KRH14673	Soybean	nucleus	29.79	31.78
PGSC0003DMT400058431	Potato	nucleus	29.41	31.63
EES10068	Sorghum	nucleus	22.39	27.38
CDY47382	Canola	golgi, plastid	20.49	25.96
EES01849	Sorghum	nucleus	10.44	20.99
KXG34100	Sorghum	cytosol	14.04	20.56
EER90058	Sorghum	plastid	10.44	19.23
OQU85520	Sorghum	nucleus, plastid	10.63	18.98
EES06526	Sorghum	nucleus	13.47	18.16
KXG30724	Sorghum	plastid	10.25	17.42
EES01076	Sorghum	nucleus	11.01	16.62
EES02078	Sorghum	nucleus	10.63	16.57
KXG38359	Sorghum	nucleus	14.23	16.56
KXG37469	Sorghum	cytosol	9.49	16.5
EER95824	Sorghum	cytosol	11.76	16.27
EER96020	Sorghum	nucleus	13.66	15.82
EER97452	Sorghum	nucleus	14.04	15.71
EER98147	Sorghum	nucleus	13.47	15.67
EER95048	Sorghum	cytosol, nucleus, plastid	9.11	15.48
EER88542	Sorghum	nucleus	12.14	15.46
OQU76075	Sorghum	plastid	10.25	15.3
OQU83904	Sorghum	nucleus	12.52	14.67
OQU81002	Sorghum	nucleus	8.54	13.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8079548	UniProt:C5Y8W3	EnsemblPlants:EES12939	ProteinID:EES12939
ProteinID:EES12939.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3006G233300	SUPFAM:SSF54928	unigene:Sbi.1520	UniParc:UPI0001A877BD	RefSeq:XP_002448611.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:57532234..57538311

Molecular Weight (calculated)

53374.7 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.305

Length

527 amino acids

Sequence
(BLAST)

001: MAPKKRKADP AESAAAAEAA AGNHRQEPAS SEPKPRGTIY FPITDDPPES TAPDEDEDDG AGDDEDDAED IAKLLEPLSR EQLVALLRTA AEASPATMAA
101: VRRAAEADPA SRKLFVHGLG WGAGAEDLRS AFSRFGELED CRVISDKQSG RSKGYGFVLF RSRRSALRAL SRPQLQIGGR LAFCHLAASG PAPPASQSQN
201: PSSNANTNAN SSSNTTTNAS GSSSSQPDNM QRKIFVGNVH ADVDVDRLYE YFAQFGEIEE GPLGFDKNTG KPKGFALFVY RSAESARRAL EEPMKNFDGK
301: TLNVQKAIDG RTKGSSGANT NANSNPTTAS VAAAAAAAAQ MTAPASAAIS PYDASAYGAT AVPDMSFAQQ AAMLGLGAQQ QAFAQPNAML AMIAAMQNPA
401: ALGMTPAMLA AMNPAFAAAA LGAGGQQAHT AGLTGFGAQG FGSQAFGAGG AAFPNAAGVQ AAVAAYQGAG APPGFQGPPG FQVGQATTQT STAAAAAASA
501: AGYQAGAAGQ GQVPGAQIGG TGFQGGY

Best Arabidopsis Sequence Match ( AT3G56860.9 )
(BLAST)

001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH

Arabidopsis Description

UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.