CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0286500-01	Rice	cytosol, nucleus, plastid	87.42	87.42
Zm00001d047753_P001	Maize	cytosol, mitochondrion, nucleus	78.39	87.1
TraesCS4B01G197500.2	Wheat	cytosol, mitochondrion, nucleus	82.58	85.62
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	82.9	85.38
HORVU4Hr1G057110.23	Barley	nucleus	81.61	81.61
TraesCS4D01G198000.3	Wheat	cytosol	81.61	79.31
VIT_13s0019g03610.t01	Wine grape	nucleus	49.35	61.94
Solyc04g049920.2.1	Tomato	nucleus	43.87	56.43
PGSC0003DMT400027411	Potato	nucleus	45.16	55.12
GSMUA_Achr3P13820_001	Banana	cytosol	48.71	54.12
GSMUA_Achr11P...	Banana	nucleus	42.9	50.19
KRH47731	Soybean	nucleus	39.35	45.69
KRH06306	Soybean	nucleus	39.35	45.35
CDY02889	Canola	nucleus	29.35	41.94
CDX73451	Canola	cytosol	32.9	40.8
AT3G54770.1	Thale cress	nucleus	33.87	40.23
CDX78261	Canola	nucleus	33.23	39.77
Bra007096.1-P	Field mustard	nucleus	32.9	39.38
CDY64698	Canola	nucleus	32.58	38.7
EES01849	Sorghum	nucleus	32.26	38.17
EER90058	Sorghum	plastid	30.65	33.22
OQU85520	Sorghum	nucleus, plastid	31.29	32.88
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	8.06	31.65
EES02078	Sorghum	nucleus	32.58	29.88
KXG30724	Sorghum	plastid	28.39	28.39
OQU76075	Sorghum	plastid	29.68	26.06
EES06526	Sorghum	nucleus	17.74	14.07
EES01076	Sorghum	nucleus	15.81	14.04
EES03272	Sorghum	nucleus	19.35	13.48
EER88542	Sorghum	nucleus	16.45	12.32
KXG34100	Sorghum	cytosol	13.87	11.94
EER98147	Sorghum	nucleus	17.42	11.92
EER96020	Sorghum	nucleus	17.42	11.87
EER97452	Sorghum	nucleus	17.1	11.25
KXG38359	Sorghum	nucleus	15.81	10.82
KXG30578	Sorghum	nucleus	12.58	10.48
EES02736	Sorghum	plastid	15.48	10.34
EER95824	Sorghum	cytosol	11.94	9.71
KXG37469	Sorghum	cytosol	9.35	9.57
OQU83904	Sorghum	nucleus	13.23	9.11
EES12939	Sorghum	nucleus	15.48	9.11
OQU81002	Sorghum	nucleus	9.68	8.96
EES10068	Sorghum	nucleus	11.94	8.58

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8084881	UniProt:C5WNL3	EnsemblPlants:EER95048	ProteinID:EER95048
ProteinID:EER95048.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009791	GO:GO:0010029	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44374	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G409700
SUPFAM:SSF54928	UniParc:UPI0001A8304A	RefSeq:XP_002468050.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:69324940..69327794

Molecular Weight (calculated)

32568.7 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.234

Length

310 amino acids

Sequence
(BLAST)

001: MTMMAPHPQP LPLAQPPPAA AAAFGDTTLT KVFVGGLAWE THKDTLREHF ERYGDILEAV IISDKLTGRS KGYGFVTFKE ADAAKKACED ATPVINGRRA
101: NCNLASLGAK PRPQPPHILR PGPSPPATPA PHAHALPSPH QPTPAIAVGS RGVSPVPWYY HPSTTPPPPP PPAAHYAHGA HQQYHGVLPF YPAATTYGYS
201: PNYVADLSYN AKLGQAAAGG TAGSYLQPQG HFAYPAAAQG GMHVAAPNGM MPVYPFYHYQ YHHASQGLGV PAAHFFPPVS AAAVTTVPAI VSKPTVMAAP
301: PKVEQVTGCS

Best Arabidopsis Sequence Match ( AT3G54770.3 )
(BLAST)

001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS

Arabidopsis Description

ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.