Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 89.35 | 92.03 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 88.39 | 91.64 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 90.97 | 88.4 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 83.55 | 83.55 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 81.61 | 81.61 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 77.1 | 80.47 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 70.65 | 78.49 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 13.23 | 61.19 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 47.74 | 59.92 |
| Solyc04g049920.2.1 | Tomato | nucleus | 43.23 | 55.6 |
| PGSC0003DMT400027411 | Potato | nucleus | 45.16 | 55.12 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 48.39 | 53.76 |
| GSMUA_Achr11P... | Banana | nucleus | 40.97 | 47.92 |
| KRH06306 | Soybean | nucleus | 38.39 | 44.24 |
| KRH47731 | Soybean | nucleus | 37.74 | 43.82 |
| CDY02889 | Canola | nucleus | 29.35 | 41.94 |
| CDX73451 | Canola | cytosol | 33.55 | 41.6 |
| HORVU6Hr1G070150.1 | Barley | plastid | 21.94 | 40.72 |
| AT3G54770.1 | Thale cress | nucleus | 34.19 | 40.61 |
| CDX78261 | Canola | nucleus | 33.87 | 40.54 |
| HORVU6Hr1G070140.3 | Barley | plastid | 20.32 | 40.38 |
| Bra007096.1-P | Field mustard | nucleus | 33.55 | 40.15 |
| CDY64698 | Canola | nucleus | 33.23 | 39.46 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 30.65 | 32.31 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 30.97 | 30.67 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 29.03 | 30.1 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 26.13 | 29.56 |
| HORVU6Hr1G078060.1 | Barley | plastid | 26.77 | 26.27 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 28.06 | 26.2 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 18.71 | 13.15 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 16.13 | 12.53 |
| HORVU6Hr1G054690.5 | Barley | plastid | 7.1 | 11.7 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 15.16 | 11.35 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 12.58 | 11.02 |
| HORVU6Hr1G040220.5 | Barley | plastid | 16.45 | 10.99 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 16.13 | 10.8 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 12.9 | 10.78 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 12.9 | 10.75 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 12.26 | 10.44 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 14.84 | 9.43 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 10.32 | 8.84 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 14.52 | 8.82 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 6.77 | 5.17 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A287P6G2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009414 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009791 | GO:GO:0010029 |
| EnsemblPlantsGene:HORVU4Hr1G057110 | EnsemblPlants:HORVU4Hr1G057110.23 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B47661B | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:479911400..479913313
Molecular Weight (calculated)
32959.3 Da
IEP (calculated)
9.716
GRAVY (calculated)
-0.327
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: LFVTLDRTPA XPPHPSTLGV VQPAAAFGDT TLTKVFVGGL AWETHKDTLR EHFERFGDIL EAVIISDKLT GRSKGYGFVT FKEADAAKKA CEDGTPVING
101: RRANCNLASL GAKPRPQPPH LLRPSPPTTP APHHMPALPS PHHQPAPAIA VGSRGVSPVP WYYHPSTTPP PPPQAAHYGH GAHQQYHGVL PFYPAAANYG
201: YSPNYVTDLS YNAKLGQAAA APGAGGPYMQ PQGHFSYPAA AAQGGMLAPN GMMPVYPYYH YHHYHASQGL GVPAAHYFPP VSAAVPTVPA IISKPTVMLP
301: PKGNQLRRLK
101: RRANCNLASL GAKPRPQPPH LLRPSPPTTP APHHMPALPS PHHQPAPAIA VGSRGVSPVP WYYHPSTTPP PPPQAAHYGH GAHQQYHGVL PFYPAAANYG
201: YSPNYVTDLS YNAKLGQAAA APGAGGPYMQ PQGHFSYPAA AAQGGMLAPN GMMPVYPYYH YHHYHASQGL GVPAAHYFPP VSAAVPTVPA IISKPTVMLP
301: PKGNQLRRLK
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.