Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g049920.2.1 | Tomato | nucleus | 70.85 | 72.61 |
| PGSC0003DMT400027411 | Potato | nucleus | 73.28 | 71.26 |
| KRH47731 | Soybean | nucleus | 55.47 | 51.31 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 61.94 | 51.17 |
| KRH06306 | Soybean | nucleus | 55.47 | 50.93 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 61.54 | 50.5 |
| CDY02889 | Canola | nucleus | 44.13 | 50.23 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 56.28 | 49.82 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 62.35 | 49.68 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 59.51 | 49.49 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 61.94 | 49.35 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 54.66 | 48.39 |
| AT3G54770.1 | Thale cress | nucleus | 50.61 | 47.89 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 59.92 | 47.74 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 61.13 | 47.34 |
| CDX73451 | Canola | cytosol | 46.56 | 46.0 |
| GSMUA_Achr11P... | Banana | nucleus | 48.99 | 45.66 |
| Bra007096.1-P | Field mustard | nucleus | 47.37 | 45.17 |
| CDX78261 | Canola | nucleus | 46.96 | 44.79 |
| CDY64698 | Canola | nucleus | 46.96 | 44.44 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 40.49 | 37.17 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 38.87 | 35.96 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 37.65 | 33.7 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 37.65 | 32.63 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 29.15 | 24.74 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 17.41 | 16.67 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 21.05 | 15.2 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 21.46 | 14.76 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 20.65 | 14.45 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 20.24 | 14.37 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 25.1 | 13.81 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 19.84 | 13.03 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 19.03 | 11.99 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 20.65 | 11.75 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 20.65 | 11.02 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 20.24 | 10.94 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 21.05 | 10.88 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 20.65 | 10.67 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 22.27 | 10.62 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 15.38 | 10.59 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 19.84 | 10.56 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 14.17 | 7.43 |
Protein Annotations
| EntrezGene:100265113 | wikigene:100265113 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CCB56224 | ProteinID:CCB56224.1 |
| UniProt:F6HNK5 | EMBL:FN595998 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100265113 | wikigene:LOC100265113 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:TC55484 | UniParc:UPI000198477D | ArrayExpress:VIT_13s0019g03610 | EnsemblPlantsGene:VIT_13s0019g03610 | EnsemblPlants:VIT_13s0019g03610.t01 | unigene:Vvi.15254 |
| RefSeq:XP_002278641 | RefSeq:XP_002278641.2 | RefSeq:XP_010658454.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr13:+:4762665..4764549
Molecular Weight (calculated)
26692.7 Da
IEP (calculated)
8.984
GRAVY (calculated)
-0.346
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMSNAIGQF GDTTLTKVFV GGLAWETPKE AMRDHFEKYG EILEAVIISD KLTGRSKGYG FVTFKEPEAA KKACEDATPM INGRRANCNL ASLGARRPRS
101: AASSTPPHQG SNGGSRPTSA APASHVQWYY PAGTPAPPFH HQHHQAVPFY GYSPAYIAAD ISYNHKLSYT GGSYMNGHFS QVYPGQAMVG ANALMPMYPF
201: YHFHQSQTMG HPAHMFPPTT VGPMPTVPAI ISKPTSMAPN TVCLAVE
101: AASSTPPHQG SNGGSRPTSA APASHVQWYY PAGTPAPPFH HQHHQAVPFY GYSPAYIAAD ISYNHKLSYT GGSYMNGHFS QVYPGQAMVG ANALMPMYPF
201: YHFHQSQTMG HPAHMFPPTT VGPMPTVPAI ISKPTSMAPN TVCLAVE
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.