Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17717 | Soybean | nucleus | 74.42 | 54.55 |
| PGSC0003DMT400044868 | Potato | nucleus | 68.6 | 51.75 |
| Solyc07g045240.2.1 | Tomato | nucleus | 67.44 | 50.73 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 43.41 | 48.7 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 65.5 | 48.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 60.47 | 47.42 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 65.12 | 46.8 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 60.47 | 46.02 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 59.69 | 45.56 |
| Os08t0320100-01 | Rice | nucleus | 56.59 | 41.71 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 56.59 | 41.71 |
| EES01076 | Sorghum | nucleus | 55.81 | 41.26 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 56.59 | 41.24 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 56.59 | 41.01 |
| Zm00001d030579_P001 | Maize | mitochondrion | 55.04 | 40.8 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 59.69 | 40.63 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 55.81 | 40.56 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 53.1 | 40.18 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 58.14 | 39.89 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 53.1 | 39.48 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 53.88 | 37.27 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 55.04 | 37.08 |
| PGSC0003DMT400044866 | Potato | extracellular | 68.22 | 32.96 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 43.41 | 31.73 |
| OQU81002 | Sorghum | nucleus | 41.09 | 31.64 |
| Os08t0492100-02 | Rice | nucleus | 46.9 | 27.75 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 39.53 | 27.49 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 37.98 | 21.12 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 34.5 | 20.51 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 36.05 | 19.46 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 34.11 | 18.41 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 25.19 | 18.11 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 16.67 | 17.41 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 17.83 | 17.23 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 17.83 | 17.1 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 17.44 | 15.79 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 20.16 | 15.2 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 15.89 | 14.86 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 22.09 | 14.54 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 25.97 | 14.23 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 22.87 | 13.14 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 22.09 | 12.31 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 20.93 | 10.42 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 18.22 | 10.28 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 8.91 | 7.9 |
Protein Annotations
| EntrezGene:100240900 | wikigene:100240900 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI28469 | ProteinID:CBI28469.3 |
| UniProt:D7TD96 | EMBL:FN595759 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100240900 | wikigene:LOC100240900 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001BE3040 | ArrayExpress:VIT_12s0057g01280 | EnsemblPlantsGene:VIT_12s0057g01280 | EnsemblPlants:VIT_12s0057g01280.t01 | unigene:Vvi.11638 |
| RefSeq:XP_002267309 | RefSeq:XP_002267309.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:-:10029405..10031466
Molecular Weight (calculated)
28446.4 Da
IEP (calculated)
7.093
GRAVY (calculated)
-0.525
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRKAPKTH SDDGASPGKI FVGGLAKETN LDTFTKYFEK YGEITDSVVM KDRQTGRPRG FGFITYADPS VVDEVIQETH IINGKQVEIK RTIPRGSSQS
101: NDFKTRKIFV GGILTSVSED EFKNFFSKYG KVVEHEIIHD HVTKRSRGFG FIVFDNEQVV DDLLTNGNMI DMEGTQVEIK KAEPKKSSSN PGRAPSFGGD
201: SRMQMYNDGF SGYGSDPYSG LGSGGYGPAS YRALGGIDSR LGDYGGVLIW PFQSLWFL
101: NDFKTRKIFV GGILTSVSED EFKNFFSKYG KVVEHEIIHD HVTKRSRGFG FIVFDNEQVV DDLLTNGNMI DMEGTQVEIK KAEPKKSSSN PGRAPSFGGD
201: SRMQMYNDGF SGYGSDPYSG LGSGGYGPAS YRALGGIDSR LGDYGGVLIW PFQSLWFL
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.