Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030579_P001 | Maize | mitochondrion | 93.7 | 93.97 |
| Os08t0320100-01 | Rice | nucleus | 87.39 | 87.14 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 75.36 | 75.79 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 73.64 | 75.37 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 75.64 | 70.78 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 66.48 | 68.64 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.9 | 67.78 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 65.04 | 66.96 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 63.32 | 63.51 |
| PGSC0003DMT400044868 | Potato | nucleus | 59.89 | 61.11 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 66.19 | 60.95 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 61.6 | 59.89 |
| Solyc07g045240.2.1 | Tomato | nucleus | 58.74 | 59.77 |
| KRH17717 | Soybean | nucleus | 59.03 | 58.52 |
| AT3G13224.2 | Thale cress | nucleus | 57.59 | 56.15 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 41.26 | 55.81 |
| CDY24201 | Canola | nucleus | 57.31 | 55.25 |
| Bra039380.1-P | Field mustard | nucleus | 56.73 | 54.7 |
| CDY43360 | Canola | nucleus | 56.73 | 54.7 |
| OQU81002 | Sorghum | nucleus | 40.97 | 42.69 |
| EES06526 | Sorghum | nucleus | 45.56 | 40.66 |
| EER88542 | Sorghum | nucleus | 48.14 | 40.58 |
| PGSC0003DMT400044866 | Potato | extracellular | 59.6 | 38.95 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.74 | 34.18 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 33.81 | 31.81 |
| KXG38359 | Sorghum | nucleus | 35.82 | 27.59 |
| EER98147 | Sorghum | nucleus | 34.1 | 26.27 |
| EER96020 | Sorghum | nucleus | 34.1 | 26.15 |
| EER97452 | Sorghum | nucleus | 33.24 | 24.63 |
| OQU83904 | Sorghum | nucleus | 30.95 | 24.0 |
| KXG34100 | Sorghum | cytosol | 24.36 | 23.61 |
| EER95824 | Sorghum | cytosol | 24.07 | 22.05 |
| KXG37469 | Sorghum | cytosol | 18.62 | 21.45 |
| EES01849 | Sorghum | nucleus | 14.9 | 19.85 |
| EER90058 | Sorghum | plastid | 14.61 | 17.83 |
| EES03272 | Sorghum | nucleus | 20.92 | 16.4 |
| OQU85520 | Sorghum | nucleus, plastid | 13.75 | 16.27 |
| EES02736 | Sorghum | plastid | 21.2 | 15.95 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 14.04 | 15.81 |
| KXG30724 | Sorghum | plastid | 13.75 | 15.48 |
| EES02078 | Sorghum | nucleus | 14.61 | 15.09 |
| OQU76075 | Sorghum | plastid | 14.04 | 13.88 |
| KXG30578 | Sorghum | nucleus | 14.04 | 13.17 |
| EES12939 | Sorghum | nucleus | 16.62 | 11.01 |
| EES10068 | Sorghum | nucleus | 12.61 | 10.21 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8084829 | UniProt:C5XR18 | EnsemblPlants:EES01076 | ProteinID:EES01076 |
| ProteinID:EES01076.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3003G220800 | SUPFAM:SSF54928 | unigene:Sbi.14442 | UniParc:UPI0001A84A87 |
| RefSeq:XP_002455956.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:55627752..55630926
Molecular Weight (calculated)
36812.8 Da
IEP (calculated)
9.565
GRAVY (calculated)
-0.567
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKMKELDG ASPAKIFIGG LSKDTSMSTF KEHFGKYGDI IDAVIMKDRY TQKPRGFGFI TFADPAVVDR VIEDEHVING KLVEIKRTIP KGAAPLKDFK
101: TKKIFVGGLP SALKEDEFKE FFSKFGKVVE HEIIRDHTTN RSRGFGFIVF DAEKTVDDLL AKKGNMIDLN GSQVEIKKAE PKKPSNQPPR SLDSEPRGRP
201: YADSYDGFGS SYNYGGSFGP YRSPGSFGAR PGGYNSASGP GDYGSGYATY GGALVGYRGE PSLYSSRYGS TYGSSFGGGY GGGSYAGGLA GAYGREAGGY
301: GGSSYGPSYD SSGANTGAGF GTGGLYGART GYGSTGGSGA AGRYHPYGR
101: TKKIFVGGLP SALKEDEFKE FFSKFGKVVE HEIIRDHTTN RSRGFGFIVF DAEKTVDDLL AKKGNMIDLN GSQVEIKKAE PKKPSNQPPR SLDSEPRGRP
201: YADSYDGFGS SYNYGGSFGP YRSPGSFGAR PGGYNSASGP GDYGSGYATY GGALVGYRGE PSLYSSRYGS TYGSSFGGGY GGGSYAGGLA GAYGREAGGY
301: GGSSYGPSYD SSGANTGAGF GTGGLYGART GYGSTGGSGA AGRYHPYGR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.