Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24201 | Canola | nucleus | 90.78 | 89.78 |
| Bra039380.1-P | Field mustard | nucleus | 90.5 | 89.5 |
| CDY43360 | Canola | nucleus | 90.5 | 89.5 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 72.63 | 74.71 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 68.72 | 68.52 |
| KRH17717 | Soybean | nucleus | 62.57 | 63.64 |
| PGSC0003DMT400044868 | Potato | nucleus | 59.78 | 62.57 |
| Solyc07g045240.2.1 | Tomato | nucleus | 59.5 | 62.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 55.59 | 60.49 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 55.87 | 59.17 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 55.87 | 59.0 |
| Os08t0320100-01 | Rice | nucleus | 56.42 | 57.71 |
| EES01076 | Sorghum | nucleus | 56.15 | 57.59 |
| Zm00001d030579_P001 | Maize | mitochondrion | 54.47 | 56.03 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 52.79 | 53.24 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 51.96 | 53.14 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 52.51 | 53.11 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 52.79 | 53.09 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 55.59 | 52.51 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 32.96 | 51.3 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 49.72 | 51.3 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 48.6 | 51.03 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 54.19 | 50.65 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 49.72 | 47.72 |
| AT5G40490.1 | Thale cress | nucleus | 56.15 | 47.52 |
| OQU81002 | Sorghum | nucleus | 40.22 | 42.99 |
| PGSC0003DMT400044866 | Potato | extracellular | 59.5 | 39.89 |
| AT1G17640.1 | Thale cress | nucleus | 38.55 | 37.4 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 32.4 | 31.27 |
| Os08t0492100-02 | Rice | nucleus | 37.99 | 31.19 |
| AT2G33410.1 | Thale cress | nucleus | 33.8 | 29.95 |
| AT4G14300.1 | Thale cress | nucleus | 34.36 | 29.93 |
| AT3G07810.2 | Thale cress | nucleus | 34.64 | 25.05 |
| AT4G26650.1 | Thale cress | nucleus | 31.28 | 24.62 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 24.58 | 24.44 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 30.73 | 24.28 |
| AT5G53720.1 | Thale cress | cytosol | 6.42 | 23.0 |
| AT5G55550.10 | Thale cress | nucleus | 29.89 | 21.1 |
| AT4G36960.2 | Thale cress | cytosol | 21.79 | 20.58 |
| AT1G33470.1 | Thale cress | cytosol | 13.13 | 19.18 |
| AT5G53680.1 | Thale cress | cytosol | 8.94 | 18.93 |
| AT1G20880.1 | Thale cress | nucleus | 14.25 | 18.61 |
| AT3G54770.1 | Thale cress | nucleus | 12.85 | 17.62 |
| AT1G76460.1 | Thale cress | nucleus | 13.97 | 17.54 |
| AT3G15010.2 | Thale cress | nucleus | 19.55 | 17.33 |
| AT2G41060.3 | Thale cress | nucleus | 21.23 | 16.85 |
| AT3G56860.10 | Thale cress | nucleus | 21.51 | 16.11 |
| AT1G78260.1 | Thale cress | nucleus | 12.57 | 15.68 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 7.54 | 15.43 |
| AT1G22330.1 | Thale cress | nucleus | 11.45 | 14.09 |
| AT1G22910.3 | Thale cress | nucleus | 13.41 | 13.83 |
| AT2G46780.1 | Thale cress | nucleus | 12.85 | 13.69 |
| AT2G22090.2 | Thale cress | nucleus | 11.45 | 11.82 |
| AT2G22100.1 | Thale cress | nucleus | 12.57 | 11.78 |
| AT3G06970.1 | Thale cress | nucleus | 10.34 | 11.67 |
| AT2G19380.1 | Thale cress | nucleus | 11.17 | 6.53 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:820515 | UniProt:A0A178VLS7 | ProteinID:AEE75315.1 | EMBL:AK221448 |
| ArrayExpress:AT3G13224 | EnsemblPlantsGene:AT3G13224 | RefSeq:AT3G13224 | TAIR:AT3G13224 | RefSeq:AT3G13224-TAIR-G | EnsemblPlants:AT3G13224.2 |
| TAIR:AT3G13224.2 | EMBL:AY080630 | EMBL:AY123003 | Unigene:At.27259 | ProteinID:BAB03120.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_683559.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP06688.1 | PFAM:PF00076 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | UniProt:Q9LHL2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A5E02 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
Coordinates
chr3:+:4254726..4257407
Molecular Weight (calculated)
37866.5 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.799
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.