Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 54.55 | 74.42 |
| PGSC0003DMT400044868 | Potato | nucleus | 69.32 | 71.34 |
| Solyc07g045240.2.1 | Tomato | nucleus | 68.18 | 69.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.65 | 65.96 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 63.35 | 65.78 |
| CDY24201 | Canola | nucleus | 66.19 | 64.36 |
| Bra039380.1-P | Field mustard | nucleus | 65.91 | 64.09 |
| CDY43360 | Canola | nucleus | 65.91 | 64.09 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 61.08 | 63.61 |
| AT3G13224.2 | Thale cress | nucleus | 63.64 | 62.57 |
| Os08t0320100-01 | Rice | nucleus | 60.51 | 60.86 |
| KRH56541 | Soybean | nucleus | 34.09 | 60.0 |
| EES01076 | Sorghum | nucleus | 58.52 | 59.03 |
| Zm00001d030579_P001 | Maize | mitochondrion | 56.82 | 57.47 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 56.25 | 57.06 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 61.08 | 56.73 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 54.55 | 56.3 |
| KRG93213 | Soybean | nucleus | 58.52 | 54.64 |
| KRH07154 | Soybean | nucleus | 57.39 | 54.3 |
| KRG94084 | Soybean | nucleus | 57.39 | 54.01 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 56.53 | 53.35 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 51.99 | 51.69 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 52.27 | 51.69 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 51.99 | 51.55 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 51.14 | 51.43 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 55.68 | 51.17 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 31.53 | 48.26 |
| PGSC0003DMT400044866 | Potato | extracellular | 69.03 | 45.51 |
| OQU81002 | Sorghum | nucleus | 42.05 | 44.18 |
| KRH23293 | Soybean | nucleus | 40.91 | 40.79 |
| KRH07772 | Soybean | cytosol | 10.51 | 37.76 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 36.93 | 35.04 |
| Os08t0492100-02 | Rice | nucleus | 39.49 | 31.88 |
| KRH46297 | Soybean | nucleus | 40.06 | 29.44 |
| KRG98573 | Soybean | nucleus | 39.77 | 29.23 |
| KRH74025 | Soybean | nucleus | 38.92 | 28.84 |
| KRH73860 | Soybean | nucleus | 38.35 | 28.3 |
| KRH13261 | Soybean | cytosol | 9.94 | 28.23 |
| KRH14098 | Soybean | nucleus | 37.78 | 27.77 |
| KRH14284 | Soybean | nucleus | 37.22 | 27.41 |
| KRH75298 | Soybean | cytosol, nucleus | 7.67 | 27.27 |
| KRH34534 | Soybean | nucleus | 35.23 | 26.33 |
| KRH52137 | Soybean | nucleus | 28.12 | 26.19 |
| KRG92276 | Soybean | endoplasmic reticulum | 35.23 | 26.05 |
| KRH61448 | Soybean | nucleus | 28.12 | 25.78 |
| KRH77004 | Soybean | nucleus | 25.28 | 24.59 |
| KRH28467 | Soybean | cytosol | 25.28 | 24.38 |
| KRH23771 | Soybean | nucleus | 17.9 | 23.16 |
| KRH40033 | Soybean | nucleus | 17.33 | 22.43 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 20.45 | 22.22 |
| KRH26210 | Soybean | nucleus | 25.57 | 20.59 |
| KRH55109 | Soybean | nucleus | 25.57 | 20.27 |
| KRH62942 | Soybean | mitochondrion | 11.65 | 20.1 |
| KRH60871 | Soybean | nucleus, plastid | 15.91 | 19.58 |
| KRH51553 | Soybean | nucleus, plastid | 15.91 | 19.58 |
| KRH64318 | Soybean | nucleus | 13.92 | 19.07 |
| KRG95365 | Soybean | nucleus | 18.18 | 19.05 |
| KRH50169 | Soybean | nucleus | 20.45 | 18.75 |
| KRH47731 | Soybean | nucleus | 14.2 | 18.73 |
| KRH16743 | Soybean | nucleus | 14.49 | 18.61 |
| KRH18921 | Soybean | nucleus | 14.49 | 18.48 |
| KRH53608 | Soybean | nucleus | 12.78 | 18.29 |
| KRH71299 | Soybean | nucleus | 19.89 | 18.23 |
| KRH06373 | Soybean | nucleus | 14.2 | 18.05 |
| KRH67043 | Soybean | nucleus | 17.33 | 17.94 |
| KRH06306 | Soybean | nucleus | 13.64 | 17.84 |
| KRH06384 | Soybean | nucleus | 15.06 | 17.61 |
| KRH62327 | Soybean | nucleus | 14.2 | 17.42 |
| KRH47819 | Soybean | nucleus | 14.49 | 17.23 |
| KRH47808 | Soybean | nucleus | 13.92 | 17.13 |
| KRG94993 | Soybean | nucleus | 23.3 | 17.12 |
| KRH53044 | Soybean | nucleus | 13.64 | 16.72 |
| KRH66628 | Soybean | nucleus | 22.44 | 16.26 |
| KRH73477 | Soybean | nucleus | 21.02 | 14.92 |
| KRH14673 | Soybean | nucleus | 20.74 | 14.78 |
Protein Annotations
| EntrezGene:100801373 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02007828 | EnsemblPlantsGene:GLYMA_13G009800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1LXP8 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH17717 | ProteinID:KRH17717 | ProteinID:KRH17717.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233B7D7 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:2655352..2659539
Molecular Weight (calculated)
36619.3 Da
IEP (calculated)
9.312
GRAVY (calculated)
-0.546
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKFDNPH SGDGASPGKI FIGGLAKDTT LETFVKYFEK YGEITDSVIM KDRHTGRPRG FGFITYADPS VVDQVIQENH VVNGKQVEIK RTIPKGSSQA
101: NDFKTKKIFV GGIPTSVSED ELKNFFSKYG KVVEHEIIRD HTTKRSRGFG FIVFDSEKVV DNILADGNMI DMGGTQVEIK KAEPKKSSNP ASLPPFASDS
201: RARSYNDGFG GFGDSYGSFG GSGYGPGSYR SLGGFGGRLG DYGGYGAGDE FGGSFGGYGG AGAGGYAGFR GESSFGYSSR YGSYMGGLGA GYGGSGLGAY
301: GRGGGAYGTY GGPSAGGGYE SGPGAGYGGA GGGMYPSRGS YGGSSRYHPY AR
101: NDFKTKKIFV GGIPTSVSED ELKNFFSKYG KVVEHEIIRD HTTKRSRGFG FIVFDSEKVV DNILADGNMI DMGGTQVEIK KAEPKKSSNP ASLPPFASDS
201: RARSYNDGFG GFGDSYGSFG GSGYGPGSYR SLGGFGGRLG DYGGYGAGDE FGGSFGGYGG AGAGGYAGFR GESSFGYSSR YGSYMGGLGA GYGGSGLGAY
301: GRGGGAYGTY GGPSAGGGYE SGPGAGYGGA GGGMYPSRGS YGGSSRYHPY AR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.