CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55109	Soybean	nucleus	92.91	91.44
CDY55846	Canola	nucleus	60.18	65.59
CDY26001	Canola	nucleus	59.73	64.13
CDY24106	Canola	nucleus	60.41	63.92
Bra039664.1-P	Field mustard	nucleus	60.64	63.86
Bra038113.1-P	Field mustard	nucleus	60.18	63.53
CDY25867	Canola	nucleus	58.58	63.21
AT3G15010.2	Thale cress	nucleus	58.12	62.87
VIT_19s0014g01570.t01	Wine grape	nucleus	64.53	62.81
GSMUA_Achr5P09550_001	Banana	nucleus	52.4	61.56
GSMUA_Achr5P09540_001	Banana	nucleus	47.83	53.87
PGSC0003DMT400039802	Potato	nucleus	54.0	52.91
Os01t0614500-01	Rice	nucleus	50.8	49.66
EES03272	Sorghum	nucleus	50.57	49.66
HORVU3Hr1G053990.1	Barley	nucleus	49.89	49.43
Zm00001d011336_P002	Maize	nucleus	50.57	49.33
TraesCS3A01G220400.1	Wheat	nucleus	49.66	49.32
TraesCS3D01G232300.1	Wheat	nucleus	49.2	48.86
TraesCS3B01G250700.1	Wheat	golgi	49.2	48.86
Zm00001d044469_P003	Maize	nucleus	49.66	48.55
KRH50169	Soybean	nucleus	42.33	48.18
KRH71299	Soybean	nucleus	42.11	47.92
Solyc12g014210.1.1	Tomato	nucleus	35.93	46.87
KRH75298	Soybean	cytosol, nucleus	8.7	38.38
KRH07772	Soybean	cytosol	8.01	35.71
KRG95365	Soybean	nucleus	27.46	35.71
KRH67043	Soybean	nucleus	27.69	35.59
PGSC0003DMT400032256	Potato	nucleus	24.49	34.29
KRH13261	Soybean	cytosol	9.61	33.87
PGSC0003DMT400031324	Potato	cytosol	9.61	30.22
KRG94993	Soybean	nucleus	32.95	30.06
KRH66628	Soybean	nucleus	32.95	29.63
KRH73477	Soybean	nucleus	31.35	27.62
PGSC0003DMT400031418	Potato	extracellular, golgi	22.88	27.47
KRH14673	Soybean	nucleus	30.66	27.13
KRH17717	Soybean	nucleus	20.59	25.57
KRH18921	Soybean	nucleus	14.87	23.55
KRH60871	Soybean	nucleus, plastid	15.33	23.43
KRH16743	Soybean	nucleus	14.65	23.36
KRH64318	Soybean	nucleus	13.73	23.35
KRH23771	Soybean	nucleus	14.42	23.16
KRH51553	Soybean	nucleus, plastid	15.1	23.08
KRH06306	Soybean	nucleus	14.19	23.05
KRH40033	Soybean	nucleus	14.19	22.79
KRH47731	Soybean	nucleus	13.73	22.47
KRH53608	Soybean	nucleus	12.59	22.36
KRG94084	Soybean	nucleus	18.76	21.93
KRH07154	Soybean	nucleus	18.54	21.77
KRH62327	Soybean	nucleus	14.19	21.6
KRH53044	Soybean	nucleus	14.19	21.6
KRH62942	Soybean	mitochondrion	10.07	21.57
KRG93213	Soybean	nucleus	18.31	21.22
KRH23293	Soybean	nucleus	16.7	20.68
KRH56541	Soybean	nucleus	9.38	20.5
KRH47819	Soybean	nucleus	13.73	20.27
KRH06384	Soybean	nucleus	13.96	20.27
KRH06373	Soybean	nucleus	12.81	20.22
KRH47808	Soybean	nucleus	12.81	19.58
KRH28467	Soybean	cytosol	16.02	19.18
KRH77004	Soybean	nucleus	15.79	19.06
KRG98573	Soybean	nucleus	20.82	19.0
KRH74025	Soybean	nucleus	20.59	18.95
KRG92276	Soybean	endoplasmic reticulum	20.59	18.91
KRH34534	Soybean	nucleus	20.37	18.9
KRH14284	Soybean	nucleus	20.37	18.62
KRH46297	Soybean	nucleus	20.37	18.58
KRH14098	Soybean	nucleus	20.37	18.58
KRH73860	Soybean	nucleus	20.14	18.45
KRH61448	Soybean	nucleus	15.56	17.71
KRH52137	Soybean	nucleus	14.87	17.2
KRH05541	Soybean	cytosol, endoplasmic reticulum	10.3	13.89

Protein Annotations

EntrezGene:100794097	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A0R4J4T4	EMBL:ACUP02007608	EnsemblPlantsGene:GLYMA_12G159600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
ProteinID:KRH26208.1	ProteinID:KRH26209.1	EnsemblPlants:KRH26210	ProteinID:KRH26210	ProteinID:KRH26210.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001B63CD8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:28263504..28270852

Molecular Weight (calculated)

44375.2 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.414

Length

437 amino acids

Sequence
(BLAST)

001: MDPTKKRKLD ENGFINNDSS EPLKLSPSDA RKLIERFTTD QLLDILQDTV ARHPDVLAAV RAVSDPDVSQ RKLFIRGLGW DTTTDGLRSL FSTYGDLEEA
101: VVILDKATGK SKGYGFVTFR HVDGALLALR EPSKRIDGRV TVTQLAAAGN SALNANAVDV ALRKIYVANV PPDLPADKLL AHFSVYGEIE EGPLGFDKQT
201: GKSKGFALFV YKSPEGAKAA LIDPMKTVEG RQLSCKLAIT DGKQGKRSGP DSGQAHHGNV QHGHGDGVGA GMGIPPNSGS GSGPGQYGGP GHYGPTVGMG
301: SYGGFGGQPP MGNNNHPLNS SNPVPGSMAG AGGYGGGMGG PYGGYGGGPG STGFAGAGGM GAGGGGVGGG GLGGAGGGSM YRLPGSGGMP AGGGGYPDSG
401: HYGLSASSGY QNQHHPPSGA SPVPRVPPMY PNVPPYY

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.