CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03510
KRH54582
KRH56889
KRH63298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20880.1	KRH03510	AT5G61380.1	21798944
AT1G20880.1	KRH54582	AT5G61380.1	21798944
AT1G20880.1	KRH56889	AT5G61380.1	21798944
AT1G20880.1	KRH63298	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60871	Soybean	nucleus, plastid	96.85	96.85
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	80.07	80.35
KRH75298	Soybean	cytosol, nucleus	24.83	71.72
CDY31859	Canola	nucleus	60.14	71.37
Bra025852.1-P	Field mustard	nucleus	65.03	71.26
CDY31508	Canola	nucleus	61.89	70.8
CDY01349	Canola	nucleus	59.44	70.54
CDY29496	Canola	nucleus	63.99	70.11
CDX88283	Canola	nucleus	68.53	70.0
CDX96615	Canola	nucleus	61.54	69.84
AT1G76460.1	Thale cress	nucleus	69.58	69.82
Bra012254.1-P	Field mustard	nucleus	58.74	69.71
CDY33653	Canola	nucleus	61.54	69.57
Bra016445.1-P	Field mustard	nucleus	62.59	69.38
AT1G20880.1	Thale cress	nucleus	64.34	67.15
KRH13261	Soybean	cytosol	28.67	66.13
CDX87594	Canola	nucleus	68.53	61.25
PGSC0003DMT400035478	Potato	nucleus, plastid	53.5	54.26
Solyc02g082270.2.1	Tomato	nucleus	52.8	53.55
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	55.94	51.28
KRH16743	Soybean	nucleus	43.71	45.62
KRH23771	Soybean	nucleus	43.36	45.59
KRH40033	Soybean	nucleus	42.66	44.85
KRH18921	Soybean	nucleus	42.66	44.2
KRH62942	Soybean	mitochondrion	31.12	43.63
KRH62327	Soybean	nucleus	41.26	41.12
KRH53044	Soybean	nucleus	40.56	40.42
KRH47819	Soybean	nucleus	41.26	39.86
KRH64318	Soybean	nucleus	35.66	39.69
KRH53608	Soybean	nucleus	33.92	39.43
KRH06384	Soybean	nucleus	40.91	38.87
KRH47808	Soybean	nucleus	35.66	35.66
KRH06373	Soybean	nucleus	34.27	35.38
KRH47731	Soybean	nucleus	31.82	34.08
KRH06306	Soybean	nucleus	31.47	33.46
KRH07772	Soybean	cytosol	10.49	30.61
KRH67043	Soybean	nucleus	21.33	17.94
KRG95365	Soybean	nucleus	20.98	17.86
KRH71299	Soybean	nucleus	23.78	17.71
KRH50169	Soybean	nucleus	23.43	17.45
KRH56541	Soybean	nucleus	11.89	17.0
KRH17717	Soybean	nucleus	19.58	15.91
KRH07154	Soybean	nucleus	19.93	15.32
KRH55109	Soybean	nucleus	23.78	15.32
KRH23293	Soybean	nucleus	18.88	15.3
KRG94084	Soybean	nucleus	19.93	15.24
KRH26210	Soybean	nucleus	23.08	15.1
KRH34534	Soybean	nucleus	24.13	14.65
KRG92276	Soybean	endoplasmic reticulum	24.13	14.5
KRG93213	Soybean	nucleus	18.88	14.32
KRG98573	Soybean	nucleus	23.43	13.99
KRH46297	Soybean	nucleus	23.08	13.78
KRH52137	Soybean	nucleus	18.18	13.76
KRH73860	Soybean	nucleus	22.38	13.42
KRH14284	Soybean	nucleus	22.03	13.18
KRH74025	Soybean	nucleus	21.68	13.05
KRH61448	Soybean	nucleus	17.48	13.02
KRH77004	Soybean	nucleus	16.43	12.98
KRH14098	Soybean	nucleus	21.68	12.94
KRH28467	Soybean	cytosol	16.43	12.88
KRH66628	Soybean	nucleus	21.33	12.55
KRG94993	Soybean	nucleus	20.98	12.53
KRH05541	Soybean	cytosol, endoplasmic reticulum	13.99	12.35
KRH73477	Soybean	nucleus	21.33	12.3
KRH14673	Soybean	nucleus	20.98	12.15

Protein Annotations

EntrezGene:100779244	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02003380	EnsemblPlantsGene:GLYMA_06G014300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1K789	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH51553	ProteinID:KRH51553	ProteinID:KRH51553.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44828	PANTHER:PTHR44828:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00023C417D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:1081936..1086961

Molecular Weight (calculated)

30722.0 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.348

Length

286 amino acids

Sequence
(BLAST)

001: MAYQAIQVPS SGSSSSSGFQ LLNSPFGDTT YTKVFVGGLA WETQSETMRR YFDQFGEILE AVVITDKNTG RSKGYGFVTF RDPEAARRAC ADPTPVIDGR
101: RANCNLASLG RPRPPLPYGR IRPASPYVGS LQPARGAYVG GFGYQQQPVS YSYQQGLVYP PYGYTTYGPE YIYPQSLYNP YMGQQYLQIY GVPGAVNTTV
201: YPYGQVGQAI PSGHGYSAIQ GYTVPGHQIV PYGGSNVNAI TTSPMPAIQA SYPSGIAAPV PGQPQFIVPA HSPQFMQGSG PDQTAG

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.