Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121710.2.1 | Tomato | nucleus | 37.39 | 49.07 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 48.44 | 48.44 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 39.09 | 47.26 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 43.63 | 45.7 |
| GSMUA_Achr10P... | Banana | nucleus | 42.49 | 45.05 |
| Solyc06g062740.1.1 | Tomato | cytosol | 24.08 | 43.15 |
| PGSC0003DMT400006638 | Potato | nucleus | 47.03 | 43.01 |
| KRH56541 | Soybean | nucleus | 24.36 | 43.0 |
| CDY26229 | Canola | nucleus | 44.76 | 42.59 |
| CDY48318 | Canola | nucleus | 44.48 | 42.2 |
| Os02t0221500-01 | Rice | nucleus | 47.31 | 42.07 |
| AT1G17640.1 | Thale cress | nucleus | 43.91 | 42.01 |
| KRH07154 | Soybean | nucleus | 43.34 | 41.13 |
| KRH17717 | Soybean | nucleus | 40.79 | 40.91 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 46.46 | 40.9 |
| Zm00001d016349_P002 | Maize | nucleus | 44.48 | 40.89 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 43.63 | 40.74 |
| EES06526 | Sorghum | nucleus | 45.04 | 40.66 |
| KRG94084 | Soybean | nucleus | 43.06 | 40.64 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 45.33 | 40.1 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 46.46 | 40.1 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 46.18 | 39.47 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 46.18 | 39.37 |
| PGSC0003DMT400012372 | Potato | nucleus | 32.86 | 39.06 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 45.61 | 38.98 |
| EER88542 | Sorghum | nucleus | 45.33 | 38.65 |
| Zm00001d046190_P001 | Maize | extracellular | 45.04 | 38.04 |
| KRH07772 | Soybean | cytosol | 10.48 | 37.76 |
| KRG93213 | Soybean | nucleus | 39.66 | 37.14 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 44.76 | 35.59 |
| HORVU6Hr1G040220.5 | Barley | plastid | 46.46 | 35.34 |
| PGSC0003DMT400012369 | Potato | nucleus | 40.79 | 32.95 |
| Solyc06g062730.1.1 | Tomato | nucleus | 32.29 | 31.06 |
| KRH75298 | Soybean | cytosol, nucleus | 8.22 | 29.29 |
| Zm00001d053572_P002 | Maize | cytosol | 44.48 | 28.6 |
| KRH13261 | Soybean | cytosol | 9.63 | 27.42 |
| KRH74025 | Soybean | nucleus | 35.98 | 26.74 |
| KRG98573 | Soybean | nucleus | 35.41 | 26.1 |
| KRH28467 | Soybean | cytosol | 26.91 | 26.03 |
| KRH77004 | Soybean | nucleus | 26.63 | 25.97 |
| KRH14098 | Soybean | nucleus | 35.13 | 25.89 |
| KRH34534 | Soybean | nucleus | 34.28 | 25.69 |
| KRH46297 | Soybean | nucleus | 34.84 | 25.68 |
| KRH52137 | Soybean | nucleus | 27.2 | 25.4 |
| KRH61448 | Soybean | nucleus | 27.48 | 25.26 |
| KRH73860 | Soybean | nucleus | 33.99 | 25.16 |
| KRG92276 | Soybean | endoplasmic reticulum | 33.43 | 24.79 |
| KRH14284 | Soybean | nucleus | 33.43 | 24.69 |
| KRH23771 | Soybean | nucleus | 16.43 | 21.32 |
| KRH40033 | Soybean | nucleus | 15.86 | 20.59 |
| KRH51553 | Soybean | nucleus, plastid | 15.3 | 18.88 |
| KRH60871 | Soybean | nucleus, plastid | 15.3 | 18.88 |
| KRH62942 | Soybean | mitochondrion | 10.76 | 18.63 |
| KRG95365 | Soybean | nucleus | 16.71 | 17.56 |
| KRH50169 | Soybean | nucleus | 18.98 | 17.45 |
| KRH62327 | Soybean | nucleus | 14.16 | 17.42 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 15.86 | 17.28 |
| KRH47731 | Soybean | nucleus | 13.03 | 17.23 |
| KRH71299 | Soybean | nucleus | 18.7 | 17.19 |
| KRH16743 | Soybean | nucleus | 13.31 | 17.15 |
| KRH67043 | Soybean | nucleus | 16.43 | 17.06 |
| KRH06306 | Soybean | nucleus | 12.75 | 16.73 |
| KRH26210 | Soybean | nucleus | 20.68 | 16.7 |
| KRH18921 | Soybean | nucleus | 13.03 | 16.67 |
| KRH55109 | Soybean | nucleus | 20.4 | 16.22 |
| KRH53044 | Soybean | nucleus | 13.03 | 16.03 |
| KRH64318 | Soybean | nucleus | 11.61 | 15.95 |
| KRH06384 | Soybean | nucleus | 13.6 | 15.95 |
| KRH47819 | Soybean | nucleus | 13.31 | 15.88 |
| KRH53608 | Soybean | nucleus | 11.05 | 15.85 |
| KRH06373 | Soybean | nucleus | 11.9 | 15.16 |
| KRH47808 | Soybean | nucleus | 11.33 | 13.99 |
| KRH73477 | Soybean | nucleus | 19.26 | 13.71 |
| KRG94993 | Soybean | nucleus | 18.41 | 13.57 |
| KRH14673 | Soybean | nucleus | 18.7 | 13.36 |
| KRH66628 | Soybean | nucleus | 17.85 | 12.96 |
Protein Annotations
| EntrezGene:100818080 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02008460 | EnsemblPlantsGene:GLYMA_13G348800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1M5B0 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH23293 | ProteinID:KRH23293 | ProteinID:KRH23293.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45276 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002262628 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:43881656..43884664
Molecular Weight (calculated)
38675.3 Da
IEP (calculated)
6.185
GRAVY (calculated)
-0.646
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYYYVSQHS QLESEADAYN VDVNDEHVKP SFNRRDSFSG KLFVGGISWE TSQESFFNYF SKYGEVTDSV IMTNKLSGRP RGFGFVTFAN SAVADEVLAQ
101: EHTIDHRVVE VKRTVPREDV DVTGVFKTKK IFVGGIAQFF TDDELREYFS PYGNVIECQI MLDHNTGRSR GFGFVTFDDE DSVEKVFSVG KIHEIGGKQV
201: EIKRAEPKRS GVDYCNTSRK SYGGFGNEMD GHGGNSSRNR NHGKRGGQYT GSGMNGAYGH FDGSFGGSAA TVYGGYCGYG YEFGYGGPMY CFGGYGLNSY
301: GNPGGYGSGI TSYGDVNAYG RAGSFNGSGG YDSSKVAEKG DGPTTGRYHP YWK
101: EHTIDHRVVE VKRTVPREDV DVTGVFKTKK IFVGGIAQFF TDDELREYFS PYGNVIECQI MLDHNTGRSR GFGFVTFDDE DSVEKVFSVG KIHEIGGKQV
201: EIKRAEPKRS GVDYCNTSRK SYGGFGNEMD GHGGNSSRNR NHGKRGGQYT GSGMNGAYGH FDGSFGGSAA TVYGGYCGYG YEFGYGGPMY CFGGYGLNSY
301: GNPGGYGSGI TSYGDVNAYG RAGSFNGSGG YDSSKVAEKG DGPTTGRYHP YWK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.