Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 82.49 | 83.48 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 55.19 | 63.7 |
| Zm00001d016349_P002 | Maize | nucleus | 64.09 | 56.25 |
| EES06526 | Sorghum | nucleus | 64.99 | 56.01 |
| Os02t0221500-01 | Rice | nucleus | 65.28 | 55.42 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 14.84 | 53.76 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 59.94 | 53.44 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 63.5 | 53.37 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 64.69 | 53.3 |
| EER88542 | Sorghum | nucleus | 65.28 | 53.14 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 64.99 | 53.03 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 64.69 | 52.78 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 62.31 | 52.63 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 64.39 | 52.42 |
| Solyc03g121710.2.1 | Tomato | nucleus | 41.54 | 52.04 |
| Zm00001d046190_P001 | Maize | extracellular | 64.39 | 51.91 |
| HORVU6Hr1G040220.5 | Barley | plastid | 64.69 | 46.98 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 61.72 | 46.85 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 48.07 | 45.89 |
| PGSC0003DMT400006638 | Potato | nucleus | 52.23 | 45.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.62 | 44.68 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 44.81 | 44.67 |
| Solyc06g062740.1.1 | Tomato | cytosol | 26.11 | 44.67 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 44.81 | 44.54 |
| AT1G17640.1 | Thale cress | nucleus | 48.66 | 44.44 |
| CDY26229 | Canola | nucleus | 48.66 | 44.2 |
| CDY48318 | Canola | nucleus | 48.66 | 44.09 |
| KRH23293 | Soybean | nucleus | 45.7 | 43.63 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 29.38 | 43.04 |
| Zm00001d053572_P002 | Maize | cytosol | 63.2 | 38.8 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 43.32 | 38.52 |
| GSMUA_Achr10P... | Banana | nucleus | 28.19 | 38.31 |
| PGSC0003DMT400012372 | Potato | nucleus | 32.64 | 37.04 |
| PGSC0003DMT400012369 | Potato | nucleus | 39.17 | 30.21 |
| Solyc06g062730.1.1 | Tomato | nucleus | 32.34 | 29.7 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 15.13 | 28.18 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 35.61 | 27.52 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 12.17 | 27.15 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 10.98 | 25.17 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 26.11 | 24.51 |
| GSMUA_Achr10P... | Banana | nucleus | 33.23 | 24.35 |
| GSMUA_Achr10P... | Banana | nucleus | 31.75 | 24.32 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 23.15 | 23.71 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 30.56 | 23.3 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 18.1 | 23.28 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 10.68 | 22.64 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 11.87 | 22.6 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 33.23 | 22.4 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 22.26 | 22.39 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 16.62 | 21.62 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 17.21 | 21.48 |
| GSMUA_Achr10P... | Banana | nucleus | 17.21 | 21.4 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 25.22 | 21.04 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 26.71 | 20.36 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.62 | 19.31 |
| GSMUA_Achr11P... | Banana | nucleus | 15.13 | 19.25 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 15.73 | 19.0 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 20.18 | 18.28 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 12.76 | 18.22 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 13.65 | 17.42 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 19.29 | 16.75 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 11.87 | 16.6 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 33.23 | 16.49 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 22.26 | 16.09 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 18.99 | 14.75 |
| GSMUA_Achr10P... | Banana | nucleus | 8.9 | 12.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.32 | 12.82 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 16.62 | 12.67 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 15.73 | 7.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P13480_001 | EnsemblPlants:GSMUA_Achr7T13480_001 | EnsemblPlantsGene:GSMUA_Achr7G13480_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002968188 | UniProt:M0TH85 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G13480_001]
Coordinates
chr7:-:10888592..10894915
Molecular Weight (calculated)
35480.7 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.782
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGVHGQ GGGGEGDVEG DDDGDGSGEP VGKRMDNSGG EEMKQADIGS SSAGKIFVGG VAWDTTEETF NEHFSKYGEI TDSVIMKDKN THMPRGFGFV
101: TFADPSVIDK VLEDEHVIDG RMVEVKRTVP REDMPSKAGN RTRKIFVGGL PTSLTEDELK EHFSLYGEVV ENQIMLDHST GRSRGFGFVT FKTEEAVDKI
201: ISEGRMHDLA GKQVEIKRAE PKRSGGHSAV NGRASHGASG GSAHGYRGSS YGYGGSHRYG GNYYEGGTGY GYGRGYNYGG VPGYGAGYGS NYGGPMYGGG
301: GYGGGNLYGG PGGYSNWYGG YGSGGRGYGN RYHPYGK
101: TFADPSVIDK VLEDEHVIDG RMVEVKRTVP REDMPSKAGN RTRKIFVGGL PTSLTEDELK EHFSLYGEVV ENQIMLDHST GRSRGFGFVT FKTEEAVDKI
201: ISEGRMHDLA GKQVEIKRAE PKRSGGHSAV NGRASHGASG GSAHGYRGSS YGYGGSHRYG GNYYEGGTGY GYGRGYNYGG VPGYGAGYGS NYGGPMYGGG
301: GYGGGNLYGG PGGYSNWYGG YGSGGRGYGN RYHPYGK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.