Factsheet for GSMUA_Achr9P14920_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	54.8	61.01
Zm00001d052212_P001	Maize	nucleus	48.59	53.42
Os02t0755400-01	Rice	plastid	51.98	52.27
GSMUA_Achr5P05400_001	Banana	mitochondrion	72.32	48.48
AT5G53720.1	Thale cress	cytosol	27.12	48.0
GSMUA_Achr4P09830_001	Banana	mitochondrion	40.68	47.68
CDY51790	Canola	cytosol	28.25	46.73
CDY28822	Canola	cytosol, nucleus, plastid	28.25	44.64
HORVU6Hr1G070140.3	Barley	plastid	37.29	42.31
GSMUA_Achr8P23460_001	Banana	nucleus	55.37	41.53
HORVU6Hr1G070150.1	Barley	plastid	38.98	41.32
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	50.85	37.34
GSMUA_Achr5P17700_001	Banana	cytosol	18.64	35.48
GSMUA_AchrUn_...	Banana	mitochondrion	46.33	34.02
TraesCS7D01G180800.1	Wheat	nucleus	57.63	33.89
TraesCS7B01G084600.1	Wheat	nucleus	56.5	33.33
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	55.93	33.11
TraesCS7A01G178700.2	Wheat	nucleus	56.5	32.89
Os06t0220600-01	Rice	plastid	61.58	31.78
PGSC0003DMT400025900	Potato	nucleus	50.85	31.36
KXG30724	Sorghum	plastid	54.8	31.29
GSMUA_Achr8P08440_001	Banana	nucleus	45.76	31.27
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	50.85	31.03
TraesCS4A01G068100.1	Wheat	nucleus	43.5	30.92
TraesCS4D01G225900.1	Wheat	nucleus	43.5	30.92
GSMUA_Achr3P21850_001	Banana	nucleus	45.76	30.92
Os02t0714000-01	Rice	nucleus, plastid	49.72	30.66
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	47.46	30.55
Zm00001d018103_P002	Maize	plasma membrane	54.8	30.5
KRH53608	Soybean	nucleus	42.37	30.49
AT5G11412.1	Thale cress	endoplasmic reticulum	29.94	30.29
AT5G53680.1	Thale cress	cytosol	28.81	30.18
Zm00001d037209_P001	Maize	plastid	56.5	30.12
EER90058	Sorghum	plastid	48.59	30.07
KRH64318	Soybean	nucleus	43.5	29.96
GSMUA_Achr10P...	Banana	nucleus	45.76	29.89
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	46.89	29.75
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	45.2	29.63
TraesCS6B01G348100.1	Wheat	plastid	51.98	29.58
TraesCS6D01G297300.1	Wheat	plastid	51.98	29.49
HORVU6Hr1G078060.1	Barley	plastid	52.54	29.43
TraesCS6B01G306600.1	Wheat	plastid	46.89	29.12
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	46.33	28.98
OQU85520	Sorghum	nucleus, plastid	48.02	28.81
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	46.33	28.77
OQU76075	Sorghum	plastid	57.06	28.61
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	46.33	28.57
TraesCS6A01G278300.3	Wheat	plastid	46.89	28.42
TraesCS6D01G258900.4	Wheat	plastid	45.76	28.12
HORVU7Hr1G093450.6	Barley	nucleus	46.33	27.89
TraesCS4B01G225300.1	Wheat	nucleus	42.94	27.84
HORVU4Hr1G063360.1	Barley	nucleus	42.37	27.37
GSMUA_Achr11P...	Banana	nucleus	40.68	27.17
GSMUA_Achr3P13820_001	Banana	cytosol	40.68	25.81
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	47.46	25.3
Zm00001d046716_P001	Maize	nucleus	48.02	23.61
Zm00001d017829_P002	Maize	plastid	44.63	22.9
Zm00001d051627_P002	Maize	plastid	46.89	22.55
TraesCS6A01G318100.1	Wheat	nucleus	51.41	18.69
GSMUA_Achr4P32300_001	Banana	nucleus	15.25	18.37
GSMUA_Achr10P...	Banana	nucleus	23.73	18.18
GSMUA_Achr7P00730_001	Banana	cytosol	18.08	17.68
Bra029612.1-P	Field mustard	nucleus	25.99	16.03
GSMUA_Achr10P...	Banana	nucleus	21.47	15.32
AT3G06970.1	Thale cress	nucleus	27.12	15.14
GSMUA_Achr9P12410_001	Banana	nucleus	26.55	14.03
CDY24657	Canola	nucleus	26.55	13.82
GSMUA_Achr5P09550_001	Banana	nucleus	28.81	13.71
CDY05301	Canola	nucleus	27.12	13.68
CDY08023	Canola	nucleus	27.68	13.61
GSMUA_Achr5P09540_001	Banana	nucleus	28.81	13.14
CDX74070	Canola	cytosol	26.55	13.06
GSMUA_Achr9P12880_001	Banana	cytosol	16.95	13.04
Bra001228.1-P	Field mustard	cytosol	25.99	12.71
GSMUA_Achr6P24180_001	Banana	cytosol	45.76	12.14
GSMUA_Achr7P13480_001	Banana	nucleus	22.6	11.87
GSMUA_Achr10P...	Banana	nucleus	22.03	11.71
GSMUA_Achr1P19260_001	Banana	nucleus	21.47	11.24
GSMUA_Achr2P14710_001	Banana	cytosol	22.03	10.86
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	26.55	10.83
GSMUA_AchrUn_...	Banana	nucleus	25.99	10.72
GSMUA_Achr1P09440_001	Banana	cytosol	20.34	10.62
GSMUA_AchrUn_...	Banana	cytosol	19.21	10.33
GSMUA_Achr8P25380_001	Banana	nucleus	22.03	10.29
GSMUA_Achr10P...	Banana	nucleus	24.86	10.0
GSMUA_Achr4P09210_001	Banana	nucleus	24.86	9.95
GSMUA_Achr1P10970_001	Banana	nucleus	24.29	9.86
GSMUA_Achr6P15950_001	Banana	nucleus	25.42	9.66
GSMUA_Achr4P33100_001	Banana	nucleus	23.73	9.5
GSMUA_Achr10P...	Banana	nucleus	24.29	9.35
GSMUA_Achr6P10970_001	Banana	nucleus	23.73	8.4
GSMUA_Achr4P24260_001	Banana	cytosol	13.56	7.29
GSMUA_Achr4P28100_001	Banana	nucleus	16.95	6.79
GSMUA_Achr3P02300_001	Banana	nucleus	25.42	6.63
GSMUA_Achr5P17690_001	Banana	nucleus	7.91	3.47

Protein Annotations

EnsemblPlants:GSMUA_Achr9P14920_001	EnsemblPlants:GSMUA_Achr9T14920_001	EnsemblPlantsGene:GSMUA_Achr9G14920_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296EC11	UniProt:M0U0F0	MapMan:35.1	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G14920_001]

Coordinates

chr9:-:9757519..9759356

Molecular Weight (calculated)

19410.2 Da

IEP (calculated)

9.534

GRAVY (calculated)

-0.272

Length

177 amino acids

Sequence
(BLAST)

001: MASASSSTSS PQYRSRFGDT TLTKVFVGGL AWETPTEELR RYFEQFGEIL EAVIITDKFT GRSKGYGFVT FREPESARRS VADPNPVIGG RRANCNIAAL
101: GRPRPPSPRL GIIFLCIPHA RKTQDGSMYQ GPPPPYGRLP AQVGPPVIYP APLGYLTYPS EYGYQQVSAS FSLCLVL

Best Arabidopsis Sequence Match ( AT1G22330.1 )
(BLAST)

001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.