Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 50.07 | 77.27 |
| GSMUA_Achr10P... | Banana | nucleus | 49.63 | 73.26 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 53.31 | 72.4 |
| KRH74025 | Soybean | nucleus | 44.92 | 64.21 |
| KRH14098 | Soybean | nucleus | 45.21 | 64.09 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 44.33 | 62.97 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 40.94 | 62.9 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 43.74 | 62.13 |
| Os11t0637700-01 | Rice | plasma membrane | 42.71 | 62.1 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 41.97 | 61.56 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 41.83 | 61.34 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 41.83 | 61.34 |
| TraesCSU01G068500.1 | Wheat | nucleus | 41.83 | 61.34 |
| Solyc04g014820.2.1 | Tomato | cytosol | 24.15 | 61.19 |
| PGSC0003DMT400037271 | Potato | nucleus | 42.27 | 61.06 |
| KRH46297 | Soybean | nucleus | 42.56 | 60.33 |
| KRG98573 | Soybean | nucleus | 41.97 | 59.5 |
| Solyc10g006050.2.1 | Tomato | nucleus | 37.7 | 59.12 |
| PGSC0003DMT400076643 | Potato | nucleus | 41.24 | 59.07 |
| Os07t0584500-01 | Rice | nucleus | 40.5 | 58.26 |
| KRH73860 | Soybean | nucleus | 40.65 | 57.86 |
| Solyc12g014600.1.1 | Tomato | nucleus | 36.97 | 57.44 |
| EER98147 | Sorghum | nucleus | 38.29 | 57.4 |
| EER97452 | Sorghum | nucleus | 39.76 | 57.32 |
| Zm00001d019079_P001 | Maize | cytosol | 37.7 | 57.14 |
| KRH14284 | Soybean | nucleus | 40.21 | 57.11 |
| Bra001267.1-P | Field mustard | nucleus | 39.62 | 57.11 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 7.81 | 56.99 |
| Solyc07g048030.2.1 | Tomato | nucleus | 36.67 | 56.98 |
| EER96020 | Sorghum | nucleus | 38.14 | 56.92 |
| CDY07975 | Canola | nucleus | 39.47 | 56.9 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 39.47 | 56.9 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 39.32 | 56.81 |
| CDX74030 | Canola | nucleus | 39.47 | 56.78 |
| Zm00001d007772_P001 | Maize | nucleus | 37.41 | 56.57 |
| PGSC0003DMT400074192 | Potato | nucleus | 39.03 | 55.91 |
| Zm00001d006704_P002 | Maize | nucleus | 39.47 | 55.37 |
| Zm00001d019084_P002 | Maize | nucleus | 36.67 | 54.85 |
| Bra040031.1-P | Field mustard | nucleus | 39.03 | 54.53 |
| CDY22136 | Canola | nucleus | 39.03 | 54.53 |
| AT3G07810.2 | Thale cress | nucleus | 39.32 | 53.94 |
| CDY66272 | Canola | nucleus | 38.73 | 53.78 |
| Bra029681.1-P | Field mustard | nucleus | 39.32 | 53.29 |
| CDY35966 | Canola | nucleus | 38.59 | 53.04 |
| Solyc12g006180.1.1 | Tomato | nucleus | 34.17 | 52.97 |
| PGSC0003DMT400034757 | Potato | nucleus | 36.23 | 52.56 |
| Solyc11g012470.1.1 | Tomato | nucleus | 32.99 | 52.34 |
| AT4G26650.1 | Thale cress | nucleus | 34.9 | 52.09 |
| GSMUA_Achr10P... | Banana | nucleus | 19.0 | 52.02 |
| CDX94301 | Canola | nucleus | 33.73 | 51.81 |
| Bra028973.1-P | Field mustard | nucleus | 32.7 | 51.27 |
| CDX89316 | Canola | endoplasmic reticulum | 33.73 | 51.23 |
| CDY11989 | Canola | nucleus | 32.55 | 51.16 |
| Bra026413.1-P | Field mustard | nucleus | 31.81 | 51.06 |
| PGSC0003DMT400060554 | Potato | nucleus | 35.2 | 50.85 |
| CDX92807 | Canola | nucleus | 33.58 | 50.67 |
| CDY36753 | Canola | nucleus | 32.25 | 50.34 |
| Zm00001d019086_P001 | Maize | nucleus | 39.18 | 50.0 |
| TraesCS2A01G190400.1 | Wheat | plastid | 38.88 | 49.72 |
| Bra019094.1-P | Field mustard | nucleus | 33.87 | 49.68 |
| CDY46689 | Canola | nucleus | 33.87 | 49.68 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 30.19 | 49.4 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 39.18 | 49.17 |
| Bra024928.1-P | Field mustard | nucleus | 30.34 | 49.05 |
| CDY46690 | Canola | nucleus | 30.78 | 48.83 |
| Bra017475.1-P | Field mustard | nucleus | 30.49 | 48.48 |
| CDY41059 | Canola | nucleus | 30.49 | 48.48 |
| CDX77783 | Canola | nucleus | 30.19 | 48.24 |
| OQU83904 | Sorghum | nucleus | 31.66 | 47.78 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 30.93 | 46.36 |
| AT5G55550.10 | Thale cress | nucleus | 34.61 | 46.35 |
| CDY50131 | Canola | nucleus | 25.77 | 45.81 |
| Bra022145.1-P | Field mustard | nucleus | 30.78 | 45.43 |
| Bra021062.1-P | Field mustard | nucleus | 25.63 | 44.39 |
| CDY28918 | Canola | mitochondrion | 31.08 | 43.59 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 25.77 | 42.58 |
| CDY25957 | Canola | nucleus | 32.25 | 39.6 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 25.33 | 39.45 |
| CDX75170 | Canola | extracellular | 8.84 | 36.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.53 | 36.17 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 17.67 | 35.5 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 17.38 | 34.81 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 16.49 | 33.23 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 11.19 | 33.04 |
| GSMUA_Achr10P... | Banana | nucleus | 15.91 | 32.43 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 8.54 | 32.04 |
| CDY40554 | Canola | nucleus | 30.93 | 32.01 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 19.0 | 31.93 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 17.23 | 30.87 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 6.63 | 30.61 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 6.77 | 30.46 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 15.61 | 29.53 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 13.84 | 28.57 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 6.48 | 27.67 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 16.94 | 26.02 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 6.63 | 25.42 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 8.25 | 21.37 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 8.1 | 20.83 |
| GSMUA_Achr11P... | Banana | nucleus | 8.1 | 20.75 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 8.84 | 20.69 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 7.07 | 20.34 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 9.87 | 20.0 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 7.51 | 19.69 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 7.81 | 19.63 |
| GSMUA_Achr10P... | Banana | nucleus | 7.81 | 19.56 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 7.95 | 19.35 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 10.01 | 18.28 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 6.33 | 17.84 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 10.46 | 16.36 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 9.28 | 16.24 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 10.31 | 15.02 |
| GSMUA_Achr10P... | Banana | nucleus | 4.71 | 13.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.25 | 13.05 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 8.25 | 12.67 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 7.81 | 7.95 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr3G02300_001 | EnsemblPlants:GSMUA_Achr3P02300_001 |
| EnsemblPlants:GSMUA_Achr3T02300_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0SB48 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| TMHMM:TMhelix | UniParc:UPI0002957073 | SEG:seg | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G02300_001]
Coordinates
chr3:+:1509536..1517479
Molecular Weight (calculated)
75531.4 Da
IEP (calculated)
8.793
GRAVY (calculated)
-0.251
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSDLGKLFV GGISWDTDEE RLREYFRNYG EVVEAVIMKD RTTGRARGFG FVVFSDPTVA EQVVMEKHVI DGRMVEAKKA VPKDDQQILY RNNSNVHASP
101: VNGRTKKIFV GGLPSTITEG DFKKYFDQFG TVTDVVVMYD HNTRRPRGFG FITYDSEDAV DKVLFKSFHE LNGKMVEVKR AVPRELSPGP NMRSPIGGYN
201: SGLNRVNSFL NGYTQGYNPS LIGGYGMRTD SRLGLSSSAR NGFSSFGPGF GMKMNFEPSM IPNFGGNSSF SNNIGYGGGL SPYYTGNSTR YTSPNGYGGS
301: STNTSSDFSS MVRNAWGGRG LSYTMNNASY NDYMAFGNGS LGGFANRTSN WGSAPPISAR AGESTSSYVS GNLSYGDDDS DFDLGAGNFG REGGTISAKT
401: SFAASTGEFE GNYAELYSGS SVYGDPTWRS SSSELEGTGP FEYGLGNMPS DIIGKGSAGY AGNYNVTNRQ PNRDKWFRIF LMPHLFLFLT IIHITLKFEA
501: HRRYSTFSLS ELSATKKGLS CSIKGVWKNT IFNLNFSTLY QGNSITICYF WLSLLQMLCQ PNHRLCYHPL MNNTSLIRCT HTKPDNNSEL LPKVIFATYL
601: SSSKITIGDS LVICICNAMH FLLLFLCFWG IVLAFTFSLL LKVRHICYKC SFWLSQWIWI CMWLLYKGQL IWWWCTPSC
101: VNGRTKKIFV GGLPSTITEG DFKKYFDQFG TVTDVVVMYD HNTRRPRGFG FITYDSEDAV DKVLFKSFHE LNGKMVEVKR AVPRELSPGP NMRSPIGGYN
201: SGLNRVNSFL NGYTQGYNPS LIGGYGMRTD SRLGLSSSAR NGFSSFGPGF GMKMNFEPSM IPNFGGNSSF SNNIGYGGGL SPYYTGNSTR YTSPNGYGGS
301: STNTSSDFSS MVRNAWGGRG LSYTMNNASY NDYMAFGNGS LGGFANRTSN WGSAPPISAR AGESTSSYVS GNLSYGDDDS DFDLGAGNFG REGGTISAKT
401: SFAASTGEFE GNYAELYSGS SVYGDPTWRS SSSELEGTGP FEYGLGNMPS DIIGKGSAGY AGNYNVTNRQ PNRDKWFRIF LMPHLFLFLT IIHITLKFEA
501: HRRYSTFSLS ELSATKKGLS CSIKGVWKNT IFNLNFSTLY QGNSITICYF WLSLLQMLCQ PNHRLCYHPL MNNTSLIRCT HTKPDNNSEL LPKVIFATYL
601: SSSKITIGDS LVICICNAMH FLLLFLCFWG IVLAFTFSLL LKVRHICYKC SFWLSQWIWI CMWLLYKGQL IWWWCTPSC
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.