Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36753 | Canola | nucleus | 96.06 | 95.4 |
| AT5G55550.10 | Thale cress | nucleus | 84.49 | 71.99 |
| CDX92807 | Canola | nucleus | 73.84 | 70.89 |
| CDX94301 | Canola | nucleus | 70.83 | 69.23 |
| CDY46689 | Canola | nucleus | 74.07 | 69.11 |
| CDY46690 | Canola | nucleus | 67.13 | 67.76 |
| CDX89316 | Canola | endoplasmic reticulum | 69.91 | 67.56 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 57.87 | 52.3 |
| KRH14284 | Soybean | nucleus | 57.41 | 51.88 |
| KRH73860 | Soybean | nucleus | 56.94 | 51.57 |
| PGSC0003DMT400037271 | Potato | nucleus | 55.56 | 51.06 |
| KRH46297 | Soybean | nucleus | 56.48 | 50.94 |
| PGSC0003DMT400076643 | Potato | nucleus | 55.79 | 50.84 |
| KRG98573 | Soybean | nucleus | 56.25 | 50.73 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 49.09 |
| Solyc10g006050.2.1 | Tomato | nucleus | 48.84 | 48.73 |
| GSMUA_Achr10P... | Banana | nucleus | 51.39 | 48.26 |
| Solyc12g014600.1.1 | Tomato | nucleus | 48.15 | 47.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 47.69 | 46.61 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 49.54 | 46.22 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 49.54 | 46.22 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 49.54 | 46.22 |
| TraesCSU01G068500.1 | Wheat | nucleus | 49.31 | 46.0 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 53.24 | 46.0 |
| Os11t0637700-01 | Rice | plasma membrane | 49.07 | 45.4 |
| CDY07975 | Canola | nucleus | 49.31 | 45.22 |
| CDX74030 | Canola | nucleus | 49.07 | 44.92 |
| Zm00001d007772_P001 | Maize | nucleus | 45.83 | 44.1 |
| CDY41059 | Canola | nucleus | 43.06 | 43.56 |
| Zm00001d019079_P001 | Maize | cytosol | 45.14 | 43.53 |
| CDY22136 | Canola | nucleus | 48.84 | 43.42 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 47.22 | 43.4 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 47.22 | 43.31 |
| CDY66272 | Canola | nucleus | 48.84 | 43.15 |
| Os07t0584500-01 | Rice | nucleus | 46.99 | 43.01 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 41.2 | 42.89 |
| EER98147 | Sorghum | nucleus | 44.68 | 42.6 |
| CDY35966 | Canola | nucleus | 48.61 | 42.51 |
| EER97452 | Sorghum | nucleus | 46.3 | 42.46 |
| EER96020 | Sorghum | nucleus | 44.68 | 42.42 |
| CDY50131 | Canola | nucleus | 37.5 | 42.41 |
| Zm00001d019084_P002 | Maize | nucleus | 44.44 | 42.29 |
| CDX77783 | Canola | nucleus | 40.97 | 41.65 |
| Zm00001d006704_P002 | Maize | nucleus | 46.53 | 41.53 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.27 | 39.17 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.76 | 38.04 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 46.53 | 37.15 |
| CDY28918 | Canola | mitochondrion | 41.44 | 36.98 |
| CDY17173 | Canola | nucleus | 32.18 | 36.87 |
| Zm00001d019086_P001 | Maize | nucleus | 45.37 | 36.84 |
| CDY23739 | Canola | nucleus | 32.64 | 36.81 |
| CDY67299 | Canola | nucleus | 32.18 | 36.48 |
| CDX75170 | Canola | extracellular | 13.66 | 36.2 |
| CDY12068 | Canola | nucleus | 29.86 | 36.03 |
| OQU83904 | Sorghum | nucleus | 37.5 | 36.0 |
| CDX84689 | Canola | nucleus | 33.33 | 35.29 |
| CDX79527 | Canola | nucleus | 33.1 | 35.22 |
| CDX90262 | Canola | nucleus | 30.56 | 34.55 |
| CDY37724 | Canola | nucleus | 25.46 | 34.06 |
| CDY25957 | Canola | nucleus | 42.59 | 33.27 |
| CDY51790 | Canola | cytosol | 8.1 | 32.71 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 51.16 | 32.55 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.33 | 32.14 |
| CDY24201 | Canola | nucleus | 24.54 | 29.28 |
| CDY43360 | Canola | nucleus | 24.54 | 29.28 |
| CDY26229 | Canola | nucleus | 24.54 | 28.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.69 | 28.32 |
| CDY48318 | Canola | nucleus | 24.31 | 28.23 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 22.92 | 27.2 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 22.69 | 27.0 |
| CDY40554 | Canola | nucleus | 40.51 | 26.68 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 21.99 | 26.17 |
| CDY69852 | Canola | cytosol | 18.98 | 21.47 |
| CDY42724 | Canola | cytosol | 18.75 | 21.37 |
| CDX69279 | Canola | nucleus | 11.57 | 21.19 |
| CDY36357 | Canola | nucleus | 26.16 | 20.85 |
| CDY42577 | Canola | nucleus | 25.93 | 20.55 |
| CDY02889 | Canola | nucleus | 10.19 | 20.28 |
| CDY69197 | Canola | nucleus | 10.42 | 20.0 |
| CDX73279 | Canola | cytosol | 10.88 | 19.42 |
| CDY04769 | Canola | nucleus | 10.65 | 19.41 |
| CDX73451 | Canola | cytosol | 10.42 | 18.0 |
| CDY25759 | Canola | nucleus | 9.95 | 17.27 |
| CDX78261 | Canola | nucleus | 10.19 | 16.99 |
| CDY64698 | Canola | nucleus | 10.19 | 16.86 |
| CDY31508 | Canola | nucleus | 9.72 | 16.8 |
| CDX88283 | Canola | nucleus | 10.88 | 16.79 |
| CDX96615 | Canola | nucleus | 9.72 | 16.67 |
| CDY31859 | Canola | nucleus | 9.26 | 16.6 |
| CDY41556 | Canola | nucleus | 10.88 | 16.21 |
| CDY33653 | Canola | nucleus | 9.49 | 16.21 |
| CDY01349 | Canola | nucleus | 9.03 | 16.18 |
| CDY55846 | Canola | nucleus | 14.58 | 15.71 |
| CDY29496 | Canola | nucleus | 9.49 | 15.71 |
| CDY25867 | Canola | nucleus | 14.58 | 15.56 |
| CDY24106 | Canola | nucleus | 14.58 | 15.25 |
| CDY26001 | Canola | nucleus | 14.35 | 15.23 |
| CDX87460 | Canola | nucleus | 9.95 | 15.09 |
| CDX80046 | Canola | nucleus | 10.88 | 14.87 |
| CDX88432 | Canola | nucleus | 9.72 | 14.79 |
| CDX76015 | Canola | nucleus | 10.42 | 14.75 |
| CDY41557 | Canola | nucleus | 10.65 | 14.56 |
| CDY27186 | Canola | nucleus | 15.05 | 14.48 |
| CDY27523 | Canola | nucleus | 10.65 | 14.24 |
| CDY48016 | Canola | nucleus | 10.65 | 14.11 |
| CDX72106 | Canola | nucleus | 14.81 | 14.07 |
| CDX87594 | Canola | nucleus | 10.42 | 14.06 |
| CDX68024 | Canola | nucleus | 9.03 | 13.78 |
| CDX79253 | Canola | nucleus | 8.8 | 13.57 |
| CDY46642 | Canola | nucleus | 9.03 | 13.49 |
| CDY06947 | Canola | nucleus | 13.43 | 13.49 |
| CDY21356 | Canola | nucleus | 9.03 | 13.45 |
| CDY57580 | Canola | nucleus | 13.66 | 13.32 |
| CDX76950 | Canola | nucleus | 9.49 | 13.31 |
| CDY67263 | Canola | nucleus | 9.95 | 13.11 |
| CDY13782 | Canola | nucleus | 9.26 | 13.03 |
| CDY00446 | Canola | nucleus | 9.95 | 12.65 |
| CDY08023 | Canola | nucleus | 10.42 | 12.5 |
| CDX74070 | Canola | cytosol | 10.19 | 12.22 |
| CDX69277 | Canola | mitochondrion | 5.09 | 11.83 |
| CDY24657 | Canola | nucleus | 9.26 | 11.76 |
| CDY21399 | Canola | mitochondrion | 3.94 | 11.72 |
| CDY47382 | Canola | golgi, plastid | 11.11 | 11.54 |
| CDY05301 | Canola | nucleus | 9.26 | 11.4 |
| CDY15850 | Canola | nucleus | 9.72 | 11.35 |
| CDY13339 | Canola | mitochondrion | 3.94 | 10.12 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FG97 | UniProt:A0A078FG97 | EnsemblPlants:CDY11989 | ProteinID:CDY11989 |
| ProteinID:CDY11989.1 | ncoils:Coil | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00060842001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE0C45 | SEG:seg | : | : | : |
Description
BnaC03g14150DBnaC03g14150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG97]
Coordinates
chrLK032015:+:760611..763348
Molecular Weight (calculated)
47563.8 Da
IEP (calculated)
6.446
GRAVY (calculated)
-0.640
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLREYFTNYG DVVEAVIMRD RATGRARGFG FIVFADPSVA ERVILEKHII DGRTVEAKKA VPRDDHQQVM KRHASPVHLM
101: SPLHGGGRTK KIFVGGLPSS ITETEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEV SLVSNIRSPL
201: HGAGYGGIYG GGSNRMSVNN SYFNNFAPAS GYYNNLGGSV GGRFSPVIGS GRLNHELNLN LNPSYDGITF NRFPNNPYFS NASPNRYTSP IGQNRTESHY
301: SSSNIDLWGN RTDNAEPGWN LNVSSGNNRG NWGLPSSAVG NDNNGYGRNF ETGSGLSASP FEGSIGNLYR GGSVYSDSMW RQQQQQLPPQ SSQEIDAFSY
401: GYDIDNVGSD PSANDSESYN VGNRQTNRGI EA
101: SPLHGGGRTK KIFVGGLPSS ITETEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEV SLVSNIRSPL
201: HGAGYGGIYG GGSNRMSVNN SYFNNFAPAS GYYNNLGGSV GGRFSPVIGS GRLNHELNLN LNPSYDGITF NRFPNNPYFS NASPNRYTSP IGQNRTESHY
301: SSSNIDLWGN RTDNAEPGWN LNVSSGNNRG NWGLPSSAVG NDNNGYGRNF ETGSGLSASP FEGSIGNLYR GGSVYSDSMW RQQQQQLPPQ SSQEIDAFSY
401: GYDIDNVGSD PSANDSESYN VGNRQTNRGI EA
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.