Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14300.1 | CDY26790 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | CDY26791 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | CDX69849 | AT5G10270.1 | 12678503 |
| AT4G14300.1 | CDX96988 | AT5G10270.1 | 12678503 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010757.1-P | Field mustard | nucleus | 99.74 | 99.74 |
| CDY12068 | Canola | nucleus | 91.88 | 98.04 |
| AT4G14300.1 | Thale cress | nucleus | 83.25 | 77.37 |
| CDY23739 | Canola | nucleus | 59.16 | 59.01 |
| CDY17173 | Canola | nucleus | 57.07 | 57.82 |
| CDY67299 | Canola | nucleus | 57.59 | 57.74 |
| CDX79527 | Canola | nucleus | 60.73 | 57.14 |
| CDX84689 | Canola | nucleus | 60.21 | 56.37 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 67.8 | 55.82 |
| CDY37724 | Canola | nucleus | 47.12 | 55.73 |
| KRH07772 | Soybean | cytosol | 14.14 | 55.1 |
| Solyc03g005680.2.1 | Tomato | nucleus | 58.64 | 52.46 |
| Solyc09g090520.2.1 | Tomato | nucleus | 64.92 | 52.21 |
| PGSC0003DMT400044195 | Potato | nucleus | 64.4 | 51.79 |
| PGSC0003DMT400035000 | Potato | nucleus | 59.42 | 51.36 |
| KRH34534 | Soybean | nucleus | 62.83 | 50.96 |
| KRG92276 | Soybean | endoplasmic reticulum | 62.83 | 50.42 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 55.76 | 47.12 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 55.76 | 46.92 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 55.76 | 46.92 |
| KXG38359 | Sorghum | nucleus | 55.5 | 46.8 |
| Zm00001d032739_P001 | Maize | nucleus | 54.19 | 46.73 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 47.64 | 45.05 |
| Zm00001d014058_P002 | Maize | plastid | 55.5 | 43.98 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 55.76 | 41.76 |
| CDY41059 | Canola | nucleus | 36.91 | 33.02 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 35.86 | 33.01 |
| CDY24201 | Canola | nucleus | 31.15 | 32.87 |
| CDY50131 | Canola | nucleus | 32.72 | 32.72 |
| CDY07975 | Canola | nucleus | 40.31 | 32.7 |
| CDY43360 | Canola | nucleus | 30.89 | 32.6 |
| CDX77783 | Canola | nucleus | 35.86 | 32.24 |
| CDX74030 | Canola | nucleus | 39.79 | 32.2 |
| CDY26229 | Canola | nucleus | 31.15 | 32.08 |
| CDY48318 | Canola | nucleus | 30.89 | 31.72 |
| CDY22136 | Canola | nucleus | 40.31 | 31.69 |
| CDY46690 | Canola | nucleus | 35.34 | 31.54 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 28.27 | 31.21 |
| CDY66272 | Canola | nucleus | 39.79 | 31.08 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 29.32 | 30.85 |
| CDY35966 | Canola | nucleus | 39.79 | 30.77 |
| CDX92807 | Canola | nucleus | 36.13 | 30.67 |
| CDY36753 | Canola | nucleus | 34.82 | 30.57 |
| CDY11989 | Canola | nucleus | 34.55 | 30.56 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 32.72 | 30.41 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 28.53 | 29.95 |
| CDX94301 | Canola | nucleus | 34.55 | 29.86 |
| CDY46689 | Canola | nucleus | 36.13 | 29.81 |
| CDX89316 | Canola | endoplasmic reticulum | 34.82 | 29.75 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 27.49 | 28.93 |
| CDX75170 | Canola | extracellular | 12.3 | 28.83 |
| CDY28918 | Canola | mitochondrion | 36.13 | 28.51 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.85 | 26.79 |
| CDY51790 | Canola | cytosol | 7.33 | 26.17 |
| CDY25957 | Canola | nucleus | 36.65 | 25.32 |
| CDY69852 | Canola | cytosol | 24.35 | 24.35 |
| CDY42724 | Canola | cytosol | 24.08 | 24.27 |
| CDY36357 | Canola | nucleus | 33.51 | 23.62 |
| CDY31508 | Canola | nucleus | 15.45 | 23.6 |
| CDY42577 | Canola | nucleus | 33.51 | 23.49 |
| CDX73279 | Canola | cytosol | 14.4 | 22.73 |
| CDY31859 | Canola | nucleus | 14.14 | 22.41 |
| CDX96615 | Canola | nucleus | 14.66 | 22.22 |
| CDY29496 | Canola | nucleus | 15.18 | 22.22 |
| CDY01349 | Canola | nucleus | 13.87 | 21.99 |
| CDY33653 | Canola | nucleus | 14.4 | 21.74 |
| CDX88283 | Canola | nucleus | 15.71 | 21.43 |
| CDY69197 | Canola | nucleus | 12.57 | 21.33 |
| CDY04769 | Canola | nucleus | 13.09 | 21.1 |
| CDY40554 | Canola | nucleus | 35.86 | 20.88 |
| CDX69279 | Canola | nucleus | 12.57 | 20.34 |
| CDY25759 | Canola | nucleus | 12.83 | 19.68 |
| CDY55846 | Canola | nucleus | 20.42 | 19.45 |
| CDY02889 | Canola | nucleus | 10.99 | 19.35 |
| CDY25867 | Canola | nucleus | 20.42 | 19.26 |
| CDY26001 | Canola | nucleus | 20.42 | 19.16 |
| CDY24106 | Canola | nucleus | 20.68 | 19.13 |
| CDX87594 | Canola | nucleus | 15.45 | 18.44 |
| CDX73451 | Canola | cytosol | 11.78 | 18.0 |
| CDX78261 | Canola | nucleus | 11.78 | 17.37 |
| CDY64698 | Canola | nucleus | 11.78 | 17.24 |
| CDY41556 | Canola | nucleus | 12.57 | 16.55 |
| CDY27186 | Canola | nucleus | 18.85 | 16.04 |
| CDX72106 | Canola | nucleus | 18.85 | 15.82 |
| CDY06947 | Canola | nucleus | 17.28 | 15.35 |
| CDY67263 | Canola | nucleus | 13.09 | 15.24 |
| CDX80046 | Canola | nucleus | 12.57 | 15.19 |
| CDY41557 | Canola | nucleus | 12.57 | 15.19 |
| CDY21356 | Canola | nucleus | 11.52 | 15.17 |
| CDY27523 | Canola | nucleus | 12.83 | 15.17 |
| CDY48016 | Canola | nucleus | 12.83 | 15.03 |
| CDY13782 | Canola | nucleus | 12.04 | 14.98 |
| CDX76950 | Canola | nucleus | 12.04 | 14.94 |
| CDY46642 | Canola | nucleus | 11.26 | 14.88 |
| CDX88432 | Canola | nucleus | 10.99 | 14.79 |
| CDX76015 | Canola | nucleus | 11.78 | 14.75 |
| CDX87460 | Canola | nucleus | 10.99 | 14.74 |
| CDY08023 | Canola | nucleus | 13.87 | 14.72 |
| CDY57580 | Canola | nucleus | 17.02 | 14.67 |
| CDX79253 | Canola | nucleus | 10.47 | 14.29 |
| CDX68024 | Canola | nucleus | 10.47 | 14.13 |
| CDY13339 | Canola | mitochondrion | 6.02 | 13.69 |
| CDX74070 | Canola | cytosol | 12.83 | 13.61 |
| CDY00446 | Canola | nucleus | 11.52 | 12.94 |
| CDY24657 | Canola | nucleus | 11.52 | 12.94 |
| CDX69277 | Canola | mitochondrion | 6.28 | 12.9 |
| CDY05301 | Canola | nucleus | 11.52 | 12.54 |
| CDY15850 | Canola | nucleus | 12.04 | 12.43 |
| CDY47382 | Canola | golgi, plastid | 12.83 | 11.78 |
| CDY21399 | Canola | mitochondrion | 4.45 | 11.72 |
Protein Annotations
| EnsemblPlants:CDX90262 | EnsemblPlantsGene:GSBRNA2T00150830001 | Gene3D:3.30.70.330 | GO:A0A078DMM4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX90262 | ProteinID:CDX90262.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF0BC6 | MapMan:35.1 | : | : |
Description
BnaA08g17220D
Coordinates
chrLK031862:-:959800..961707
Molecular Weight (calculated)
39389.0 Da
IEP (calculated)
6.049
GRAVY (calculated)
-0.660
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDQGKLFV GGISWETDED KLREHFSSYG DVSQAIVMRD KLTGRPRGFG FVIFSDPSLL DRVLQDKHHI DSREVDVKRA MSREEQQVSG RSGSFNATRG
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRLYF EQYGPVADVV IMHDQTTSRP RGFGFVSFDS EDAVDRVLQK NFHDLNGKQV EVKRALPKDA NPGGAGRAMG
201: GGGGGGYQGF GGSEGGFDGR MDFNRYMQPQ NVGNGLPSYG GSSGYAAGGG YGNGSNGAGF GGYGGYGAGA GAAYGATGMP GGGYGSSVAP RNAWDTPSAP
301: SGYGNPGGYG NGAAQSGYGA PPAQTQYGYG GYSGSGDAGY GNQAAYGAVG GRPSVGGLNN PGGGYMGGYD PSQGYGLGRQ GQ
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRLYF EQYGPVADVV IMHDQTTSRP RGFGFVSFDS EDAVDRVLQK NFHDLNGKQV EVKRALPKDA NPGGAGRAMG
201: GGGGGGYQGF GGSEGGFDGR MDFNRYMQPQ NVGNGLPSYG GSSGYAAGGG YGNGSNGAGF GGYGGYGAGA GAAYGATGMP GGGYGSSVAP RNAWDTPSAP
301: SGYGNPGGYG NGAAQSGYGA PPAQTQYGYG GYSGSGDAGY GNQAAYGAVG GRPSVGGLNN PGGGYMGGYD PSQGYGLGRQ GQ
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.