Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040485.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY27523 | Canola | nucleus | 96.32 | 97.21 |
| CDY41557 | Canola | nucleus | 88.04 | 90.82 |
| CDX80046 | Canola | nucleus | 88.04 | 90.82 |
| CDY41556 | Canola | nucleus | 78.53 | 88.28 |
| AT2G46780.1 | Thale cress | nucleus | 86.5 | 83.93 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 46.93 | 57.3 |
| KRH06373 | Soybean | nucleus | 43.56 | 51.26 |
| CDY51790 | Canola | cytosol | 16.26 | 49.53 |
| KRH06384 | Soybean | nucleus | 45.71 | 49.5 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.87 | 49.11 |
| KRH47819 | Soybean | nucleus | 44.48 | 48.99 |
| KRH47808 | Soybean | nucleus | 40.49 | 46.15 |
| CDX73279 | Canola | cytosol | 32.52 | 43.8 |
| CDY69197 | Canola | nucleus | 29.14 | 42.22 |
| CDY31508 | Canola | nucleus | 32.21 | 42.0 |
| CDY04769 | Canola | nucleus | 29.75 | 40.93 |
| CDY33653 | Canola | nucleus | 31.29 | 40.32 |
| CDY31859 | Canola | nucleus | 29.75 | 40.25 |
| CDY29496 | Canola | nucleus | 31.9 | 39.85 |
| CDY01349 | Canola | nucleus | 29.45 | 39.83 |
| CDX96615 | Canola | nucleus | 30.37 | 39.29 |
| CDX88432 | Canola | nucleus | 34.05 | 39.08 |
| CDX88283 | Canola | nucleus | 33.13 | 38.57 |
| CDX87460 | Canola | nucleus | 33.44 | 38.25 |
| CDX68024 | Canola | nucleus | 33.13 | 38.16 |
| CDX79253 | Canola | nucleus | 32.21 | 37.5 |
| CDY25759 | Canola | nucleus | 28.22 | 36.95 |
| CDY02889 | Canola | nucleus | 24.23 | 36.41 |
| CDX73451 | Canola | cytosol | 27.61 | 36.0 |
| CDY64698 | Canola | nucleus | 28.53 | 35.63 |
| CDY21356 | Canola | nucleus | 31.6 | 35.52 |
| CDY46642 | Canola | nucleus | 30.98 | 34.95 |
| CDX78261 | Canola | nucleus | 27.3 | 34.36 |
| CDX87594 | Canola | nucleus | 33.13 | 33.75 |
| CDY00446 | Canola | nucleus | 30.67 | 29.41 |
| CDY67263 | Canola | nucleus | 28.83 | 28.66 |
| CDY13339 | Canola | mitochondrion | 14.11 | 27.38 |
| CDY21399 | Canola | mitochondrion | 8.9 | 20.0 |
| CDY24657 | Canola | nucleus | 16.87 | 16.18 |
| CDY05301 | Canola | nucleus | 17.18 | 15.95 |
| CDY26229 | Canola | nucleus | 17.48 | 15.36 |
| CDY48318 | Canola | nucleus | 17.48 | 15.32 |
| CDY08023 | Canola | nucleus | 16.87 | 15.28 |
| CDX74070 | Canola | cytosol | 16.56 | 15.0 |
| CDY13782 | Canola | nucleus | 14.11 | 14.98 |
| CDY67299 | Canola | nucleus | 17.48 | 14.96 |
| CDX76950 | Canola | nucleus | 13.8 | 14.61 |
| CDY17173 | Canola | nucleus | 16.87 | 14.59 |
| CDY55846 | Canola | nucleus | 17.79 | 14.46 |
| CDY23739 | Canola | nucleus | 16.87 | 14.36 |
| CDY25867 | Canola | nucleus | 17.79 | 14.32 |
| CDY24106 | Canola | nucleus | 18.1 | 14.29 |
| CDY26001 | Canola | nucleus | 17.79 | 14.25 |
| CDY37724 | Canola | nucleus | 14.11 | 14.24 |
| CDX79527 | Canola | nucleus | 17.18 | 13.79 |
| CDX84689 | Canola | nucleus | 17.18 | 13.73 |
| CDY12068 | Canola | nucleus | 15.03 | 13.69 |
| CDX77783 | Canola | nucleus | 17.18 | 13.18 |
| CDY50131 | Canola | nucleus | 15.03 | 12.83 |
| CDX90262 | Canola | nucleus | 15.03 | 12.83 |
| CDY06947 | Canola | nucleus | 16.87 | 12.79 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.26 | 12.77 |
| CDY41059 | Canola | nucleus | 16.26 | 12.41 |
| CDY42724 | Canola | cytosol | 14.42 | 12.4 |
| CDY07975 | Canola | nucleus | 17.79 | 12.31 |
| CDY69852 | Canola | cytosol | 14.42 | 12.3 |
| CDX74030 | Canola | nucleus | 17.79 | 12.29 |
| CDY57580 | Canola | nucleus | 16.56 | 12.19 |
| CDY24201 | Canola | nucleus | 13.5 | 12.15 |
| CDY43360 | Canola | nucleus | 13.5 | 12.15 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 12.88 | 12.14 |
| CDY35966 | Canola | nucleus | 18.1 | 11.94 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.03 | 11.92 |
| CDX76015 | Canola | nucleus | 11.04 | 11.8 |
| CDX75170 | Canola | extracellular | 5.83 | 11.66 |
| CDY66272 | Canola | nucleus | 17.48 | 11.66 |
| CDY15850 | Canola | nucleus | 13.19 | 11.62 |
| CDY28918 | Canola | mitochondrion | 17.18 | 11.57 |
| CDY22136 | Canola | nucleus | 17.18 | 11.52 |
| CDX69279 | Canola | nucleus | 8.28 | 11.44 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.58 | 11.29 |
| CDY36753 | Canola | nucleus | 15.03 | 11.26 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.27 | 10.99 |
| CDY46690 | Canola | nucleus | 14.42 | 10.98 |
| CDY27186 | Canola | nucleus | 15.03 | 10.91 |
| CDY46689 | Canola | nucleus | 15.34 | 10.8 |
| CDX72106 | Canola | nucleus | 15.03 | 10.77 |
| CDX89316 | Canola | endoplasmic reticulum | 14.72 | 10.74 |
| CDX92807 | Canola | nucleus | 14.72 | 10.67 |
| CDY11989 | Canola | nucleus | 14.11 | 10.65 |
| CDX94301 | Canola | nucleus | 14.42 | 10.63 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.66 | 10.47 |
| CDY47382 | Canola | golgi, plastid | 12.58 | 9.86 |
| CDY25957 | Canola | nucleus | 15.95 | 9.4 |
| CDY36357 | Canola | nucleus | 15.34 | 9.23 |
| CDY42577 | Canola | nucleus | 15.34 | 9.17 |
| CDY40554 | Canola | nucleus | 16.87 | 8.38 |
| CDX69277 | Canola | mitochondrion | 3.99 | 6.99 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IDN7 | UniProt:A0A078IDN7 | EnsemblPlants:CDY48016 | ProteinID:CDY48016 |
| ProteinID:CDY48016.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00088662001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002544814 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g26740DBnaA04g26740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDN7]
Coordinates
chrLK032749:-:76420..77988
Molecular Weight (calculated)
35428.2 Da
IEP (calculated)
9.230
GRAVY (calculated)
-0.595
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQRQFQME GGNNDTKLTK IFVGGLAWET QKDTMRRYFE QFGEIVEAVV ITDKNTGRSK GYGFVTFMEA EAAMRACQNM NPVIDGRRAN CNLAFLGAHK
101: PRPPTSPRHG TGRFRSPGGA GLVAPSPQFR GSSSSSALAH HHQQQQHIGQ FPFPYSSYGF SGYSQEGMYP MNYYNHHLYG GQQYSPYMGP PSSGSTGMFH
201: GYYPYYPQYN AAQSSNQAQA QTHHHGFSFQ YTATTPPPPL LQYPYLPHQQ FSSQPPPPPI LSLPTSLALS LASSASSSSS LSTSTSAATS ATKTVVITTT
301: APKAAAEASN KDGHEAITSS SIKIED
101: PRPPTSPRHG TGRFRSPGGA GLVAPSPQFR GSSSSSALAH HHQQQQHIGQ FPFPYSSYGF SGYSQEGMYP MNYYNHHLYG GQQYSPYMGP PSSGSTGMFH
201: GYYPYYPQYN AAQSSNQAQA QTHHHGFSFQ YTATTPPPPL LQYPYLPHQQ FSSQPPPPPI LSLPTSLALS LASSASSSSS LSTSTSAATS ATKTVVITTT
301: APKAAAEASN KDGHEAITSS SIKIED
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
Arabidopsis Description
At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.