Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14300.1 | CDY26790 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | CDY26791 | AT2G16950.1 | 14756317 |
| AT4G14300.1 | CDX69849 | AT5G10270.1 | 12678503 |
| AT4G14300.1 | CDX96988 | AT5G10270.1 | 12678503 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90262 | Canola | nucleus | 98.04 | 91.88 |
| Bra010757.1-P | Field mustard | nucleus | 97.77 | 91.62 |
| AT4G14300.1 | Thale cress | nucleus | 83.24 | 72.51 |
| CDY23739 | Canola | nucleus | 61.73 | 57.7 |
| CDY17173 | Canola | nucleus | 59.5 | 56.5 |
| CDY67299 | Canola | nucleus | 60.06 | 56.43 |
| CDX79527 | Canola | nucleus | 63.69 | 56.16 |
| CDX84689 | Canola | nucleus | 62.85 | 55.15 |
| KRH07772 | Soybean | cytosol | 15.08 | 55.1 |
| CDY37724 | Canola | nucleus | 48.6 | 53.87 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 67.6 | 52.16 |
| Solyc03g005680.2.1 | Tomato | nucleus | 60.61 | 50.82 |
| Solyc09g090520.2.1 | Tomato | nucleus | 66.2 | 49.89 |
| PGSC0003DMT400035000 | Potato | nucleus | 61.17 | 49.55 |
| PGSC0003DMT400044195 | Potato | nucleus | 65.64 | 49.47 |
| KRH34534 | Soybean | nucleus | 64.25 | 48.83 |
| KRG92276 | Soybean | endoplasmic reticulum | 63.69 | 47.9 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 58.1 | 46.02 |
| Zm00001d032739_P001 | Maize | nucleus | 56.7 | 45.82 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 58.1 | 45.81 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 58.1 | 45.81 |
| KXG38359 | Sorghum | nucleus | 57.82 | 45.7 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 48.88 | 43.32 |
| Zm00001d014058_P002 | Maize | plastid | 57.54 | 42.74 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 58.1 | 40.78 |
| CDY41059 | Canola | nucleus | 38.83 | 32.55 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 37.43 | 32.29 |
| CDY24201 | Canola | nucleus | 32.4 | 32.04 |
| CDY43360 | Canola | nucleus | 32.12 | 31.77 |
| CDX77783 | Canola | nucleus | 37.71 | 31.76 |
| CDY07975 | Canola | nucleus | 41.62 | 31.63 |
| CDY26229 | Canola | nucleus | 32.68 | 31.54 |
| CDY48318 | Canola | nucleus | 32.4 | 31.18 |
| CDX74030 | Canola | nucleus | 41.06 | 31.14 |
| CDY46690 | Canola | nucleus | 37.15 | 31.07 |
| CDY50131 | Canola | nucleus | 32.96 | 30.89 |
| CDY22136 | Canola | nucleus | 41.62 | 30.66 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 29.61 | 30.64 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 31.01 | 30.58 |
| CDY36753 | Canola | nucleus | 36.59 | 30.11 |
| CDY66272 | Canola | nucleus | 41.06 | 30.06 |
| CDX92807 | Canola | nucleus | 37.71 | 30.0 |
| CDY11989 | Canola | nucleus | 36.03 | 29.86 |
| CDY35966 | Canola | nucleus | 41.06 | 29.76 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 30.17 | 29.67 |
| CDX94301 | Canola | nucleus | 36.03 | 29.19 |
| CDY46689 | Canola | nucleus | 37.71 | 29.16 |
| CDX89316 | Canola | endoplasmic reticulum | 36.31 | 29.08 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 33.24 | 28.95 |
| CDX75170 | Canola | extracellular | 13.13 | 28.83 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 29.05 | 28.65 |
| CDY28918 | Canola | mitochondrion | 37.99 | 28.1 |
| CDY51790 | Canola | cytosol | 7.82 | 26.17 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.1 | 25.89 |
| CDY25957 | Canola | nucleus | 38.55 | 24.95 |
| CDY69852 | Canola | cytosol | 25.42 | 23.82 |
| CDY42724 | Canola | cytosol | 25.14 | 23.75 |
| CDY31508 | Canola | nucleus | 15.92 | 22.8 |
| CDY36357 | Canola | nucleus | 34.08 | 22.51 |
| CDX73279 | Canola | cytosol | 15.08 | 22.31 |
| CDY42577 | Canola | nucleus | 33.8 | 22.2 |
| CDY31859 | Canola | nucleus | 14.53 | 21.58 |
| CDY29496 | Canola | nucleus | 15.64 | 21.46 |
| CDX96615 | Canola | nucleus | 15.08 | 21.43 |
| CDY01349 | Canola | nucleus | 14.25 | 21.16 |
| CDY33653 | Canola | nucleus | 14.8 | 20.95 |
| CDY69197 | Canola | nucleus | 13.13 | 20.89 |
| CDX88283 | Canola | nucleus | 16.2 | 20.71 |
| CDY04769 | Canola | nucleus | 13.69 | 20.68 |
| CDY40554 | Canola | nucleus | 37.71 | 20.58 |
| CDX69279 | Canola | nucleus | 13.41 | 20.34 |
| CDY02889 | Canola | nucleus | 11.73 | 19.35 |
| CDY25759 | Canola | nucleus | 13.41 | 19.28 |
| CDX73451 | Canola | cytosol | 12.57 | 18.0 |
| CDY55846 | Canola | nucleus | 20.11 | 17.96 |
| CDX87594 | Canola | nucleus | 15.92 | 17.81 |
| CDY64698 | Canola | nucleus | 12.85 | 17.62 |
| CDY25867 | Canola | nucleus | 19.83 | 17.53 |
| CDY26001 | Canola | nucleus | 19.83 | 17.44 |
| CDY24106 | Canola | nucleus | 20.11 | 17.43 |
| CDX78261 | Canola | nucleus | 12.57 | 17.37 |
| CDY41556 | Canola | nucleus | 13.41 | 16.55 |
| CDX80046 | Canola | nucleus | 13.41 | 15.19 |
| CDY41557 | Canola | nucleus | 13.41 | 15.19 |
| CDY27523 | Canola | nucleus | 13.69 | 15.17 |
| CDY48016 | Canola | nucleus | 13.69 | 15.03 |
| CDY27186 | Canola | nucleus | 18.72 | 14.92 |
| CDY21356 | Canola | nucleus | 12.01 | 14.83 |
| CDX72106 | Canola | nucleus | 18.72 | 14.73 |
| CDY06947 | Canola | nucleus | 17.6 | 14.65 |
| CDY67263 | Canola | nucleus | 13.41 | 14.63 |
| CDY46642 | Canola | nucleus | 11.73 | 14.53 |
| CDY57580 | Canola | nucleus | 17.88 | 14.45 |
| CDX88432 | Canola | nucleus | 11.45 | 14.44 |
| CDX87460 | Canola | nucleus | 11.45 | 14.39 |
| CDY13782 | Canola | nucleus | 12.29 | 14.33 |
| CDX76950 | Canola | nucleus | 12.29 | 14.29 |
| CDX79253 | Canola | nucleus | 11.17 | 14.29 |
| CDX68024 | Canola | nucleus | 11.17 | 14.13 |
| CDX76015 | Canola | nucleus | 12.01 | 14.1 |
| CDY08023 | Canola | nucleus | 13.97 | 13.89 |
| CDY13339 | Canola | mitochondrion | 6.42 | 13.69 |
| CDX74070 | Canola | cytosol | 13.41 | 13.33 |
| CDY00446 | Canola | nucleus | 12.01 | 12.65 |
| CDY24657 | Canola | nucleus | 12.01 | 12.65 |
| CDX69277 | Canola | mitochondrion | 6.42 | 12.37 |
| CDY05301 | Canola | nucleus | 12.01 | 12.25 |
| CDY15850 | Canola | nucleus | 12.57 | 12.16 |
| CDY47382 | Canola | golgi, plastid | 13.41 | 11.54 |
| CDY21399 | Canola | mitochondrion | 4.47 | 11.03 |
Protein Annotations
| EnsemblPlants:CDY12068 | EnsemblPlantsGene:GSBRNA2T00061024001 | Gene3D:3.30.70.330 | GO:A0A078FIY1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY12068 | ProteinID:CDY12068.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEAA83 | UniProt:A0A078FIY1 | MapMan:35.1 | : |
Description
BnaC03g59840DBnaC03g59840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIY1]
Coordinates
chrLK032017:-:221583..223211
Molecular Weight (calculated)
37285.7 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.689
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDQGKLFV GGISWETDED KLREHFSSYG DVSQAIVMRD KLTGRPRGFG FVIFSDPSLL DRVLQDKHHI DSREVDVKRA MSREEQQVSG RSGNLNATRG
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EQYGPVADVV IMHDQTTSRP RGFGFVSFDS EDAVDRVLQK SFHDLNGKQV EVKRALPKDA NPGGAGRAMG
201: GGYQGFGGSE GGFDGRVDFN RYMQPQNVGN GLPSYGGSSG YGAGGGYGNG SNGAGFGGYG GYGAGAGAAY GATGMPGGGY GSSVAPRNAW DTPSAPSGYG
301: NPGGYGNGAA QSGYGAPPAQ TQYGYGGYSG SGDAGYGNQA AYGAVGGRPR YGLGRQGQ
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EQYGPVADVV IMHDQTTSRP RGFGFVSFDS EDAVDRVLQK SFHDLNGKQV EVKRALPKDA NPGGAGRAMG
201: GGYQGFGGSE GGFDGRVDFN RYMQPQNVGN GLPSYGGSSG YGAGGGYGNG SNGAGFGGYG GYGAGAGAAY GATGMPGGGY GSSVAPRNAW DTPSAPSGYG
301: NPGGYGNGAA QSGYGAPPAQ TQYGYGGYSG SGDAGYGNQA AYGAVGGRPR YGLGRQGQ
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.