Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025568.1-P | Field mustard | nucleus | 98.71 | 98.17 |
| CDY42577 | Canola | nucleus | 98.52 | 97.98 |
| AT5G40490.1 | Thale cress | nucleus | 69.19 | 88.65 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 47.05 | 67.82 |
| KRH07154 | Soybean | nucleus | 45.39 | 66.13 |
| KRG94084 | Soybean | nucleus | 45.2 | 65.51 |
| KRH56541 | Soybean | nucleus | 23.8 | 64.5 |
| KRG93213 | Soybean | nucleus | 44.28 | 63.66 |
| Solyc02g093340.2.1 | Tomato | nucleus | 43.91 | 61.18 |
| PGSC0003DMT400032811 | Potato | nucleus | 43.36 | 60.41 |
| CDY24201 | Canola | nucleus | 37.45 | 56.08 |
| CDY43360 | Canola | nucleus | 37.45 | 56.08 |
| CDY48318 | Canola | nucleus | 28.41 | 41.4 |
| CDY26229 | Canola | nucleus | 28.23 | 41.24 |
| CDY12068 | Canola | nucleus | 22.51 | 34.08 |
| CDX90262 | Canola | nucleus | 23.62 | 33.51 |
| CDY23739 | Canola | nucleus | 23.06 | 32.64 |
| CDX79527 | Canola | nucleus | 24.35 | 32.51 |
| CDY17173 | Canola | nucleus | 22.51 | 32.36 |
| CDX84689 | Canola | nucleus | 24.17 | 32.11 |
| CDY67299 | Canola | nucleus | 22.51 | 32.02 |
| CDY37724 | Canola | nucleus | 18.82 | 31.58 |
| CDY07975 | Canola | nucleus | 26.38 | 30.36 |
| CDX77783 | Canola | nucleus | 23.43 | 29.88 |
| CDX74030 | Canola | nucleus | 26.01 | 29.87 |
| CDY22136 | Canola | nucleus | 26.57 | 29.63 |
| CDY41059 | Canola | nucleus | 23.25 | 29.51 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 22.51 | 29.4 |
| CDY35966 | Canola | nucleus | 26.57 | 29.15 |
| CDY66272 | Canola | nucleus | 26.2 | 29.04 |
| CDY50131 | Canola | nucleus | 19.93 | 28.27 |
| CDX75170 | Canola | extracellular | 8.3 | 27.61 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.48 | 27.01 |
| CDY11989 | Canola | nucleus | 20.85 | 26.16 |
| CDX94301 | Canola | nucleus | 21.22 | 26.02 |
| CDY28918 | Canola | mitochondrion | 22.88 | 25.62 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.16 | 25.62 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.97 | 25.27 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 16.05 | 25.14 |
| CDX92807 | Canola | nucleus | 20.85 | 25.11 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 5.17 | 25.0 |
| CDX89316 | Canola | endoplasmic reticulum | 20.48 | 24.83 |
| CDY36753 | Canola | nucleus | 19.93 | 24.83 |
| CDY46690 | Canola | nucleus | 19.56 | 24.77 |
| CDY46689 | Canola | nucleus | 20.85 | 24.41 |
| CDY51790 | Canola | cytosol | 4.8 | 24.3 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 16.24 | 24.24 |
| CDY31859 | Canola | nucleus | 10.52 | 23.65 |
| CDY25957 | Canola | nucleus | 23.8 | 23.33 |
| CDY69852 | Canola | cytosol | 16.24 | 23.04 |
| CDY42724 | Canola | cytosol | 16.05 | 22.96 |
| CDY01349 | Canola | nucleus | 10.15 | 22.82 |
| CDY31508 | Canola | nucleus | 10.33 | 22.4 |
| CDX96615 | Canola | nucleus | 10.33 | 22.22 |
| CDY33653 | Canola | nucleus | 10.33 | 22.13 |
| CDX69279 | Canola | nucleus | 9.59 | 22.03 |
| CDY02889 | Canola | nucleus | 8.67 | 21.66 |
| CDX73451 | Canola | cytosol | 9.96 | 21.6 |
| CDY24106 | Canola | nucleus | 16.24 | 21.31 |
| CDY04769 | Canola | nucleus | 9.23 | 21.1 |
| CDY29496 | Canola | nucleus | 10.15 | 21.07 |
| CDY69197 | Canola | nucleus | 8.67 | 20.89 |
| CDY26001 | Canola | nucleus | 15.68 | 20.88 |
| CDX78261 | Canola | nucleus | 9.96 | 20.85 |
| CDX88283 | Canola | nucleus | 10.7 | 20.71 |
| CDY55846 | Canola | nucleus | 15.31 | 20.7 |
| CDY25867 | Canola | nucleus | 15.31 | 20.49 |
| CDY25759 | Canola | nucleus | 9.41 | 20.48 |
| CDY64698 | Canola | nucleus | 9.59 | 19.92 |
| CDY57580 | Canola | nucleus | 16.24 | 19.86 |
| CDX73279 | Canola | cytosol | 8.86 | 19.83 |
| CDY06947 | Canola | nucleus | 15.68 | 19.77 |
| CDX72106 | Canola | nucleus | 16.42 | 19.56 |
| CDX76015 | Canola | nucleus | 10.89 | 19.34 |
| CDY27186 | Canola | nucleus | 15.87 | 19.15 |
| CDY40554 | Canola | nucleus | 22.88 | 18.9 |
| CDX87594 | Canola | nucleus | 10.52 | 17.81 |
| CDX68024 | Canola | nucleus | 9.04 | 17.31 |
| CDY41556 | Canola | nucleus | 9.23 | 17.24 |
| CDX79253 | Canola | nucleus | 8.86 | 17.14 |
| CDX88432 | Canola | nucleus | 8.86 | 16.9 |
| CDX69277 | Canola | mitochondrion | 5.72 | 16.67 |
| CDX87460 | Canola | nucleus | 8.67 | 16.49 |
| CDX80046 | Canola | nucleus | 9.41 | 16.14 |
| CDY41557 | Canola | nucleus | 9.41 | 16.14 |
| CDY46642 | Canola | nucleus | 8.49 | 15.92 |
| CDX76950 | Canola | nucleus | 9.04 | 15.91 |
| CDY67263 | Canola | nucleus | 9.59 | 15.85 |
| CDY13782 | Canola | nucleus | 8.86 | 15.64 |
| CDY27523 | Canola | nucleus | 9.23 | 15.48 |
| CDY48016 | Canola | nucleus | 9.23 | 15.34 |
| CDY21356 | Canola | nucleus | 8.12 | 15.17 |
| CDY15850 | Canola | nucleus | 9.96 | 14.59 |
| CDY21399 | Canola | mitochondrion | 3.87 | 14.48 |
| CDY00446 | Canola | nucleus | 8.86 | 14.12 |
| CDY47382 | Canola | golgi, plastid | 10.33 | 13.46 |
| CDY13339 | Canola | mitochondrion | 4.06 | 13.1 |
| CDY08023 | Canola | nucleus | 7.93 | 11.94 |
| CDX74070 | Canola | cytosol | 7.56 | 11.39 |
| CDY05301 | Canola | nucleus | 7.01 | 10.83 |
| CDY24657 | Canola | nucleus | 6.64 | 10.59 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HEZ2 | UniProt:A0A078HEZ2 | EnsemblPlants:CDY36357 | ProteinID:CDY36357 |
| ProteinID:CDY36357.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00060385001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 |
| PANTHER:PTHR45276:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDB9E5 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g32650DBnaC04g32650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEZ2]
Coordinates
chrLK032374:+:23481..26838
Molecular Weight (calculated)
56471.5 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.724
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPYATETVV DEENHEVKPS EDAEDDDDKS QPQSGGGIDS AGKIFVGGLA RETTSAEFVK HFEKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKLI
101: QDNHIINGKQ VEIKRTIPRG SMSSSNEIKT KKIFVGGIPS TVDDDEFKEF FMQFGELKEH QIMRDHATGR SRGFGFVTYE SEDMVDLLLA KGNRIELSGT
201: QVEIKKAEPK KPNSVTTPSR RFGDSRSNFG GGYGDGYGGG PGGGYGGPDG PYKSGGGYGG GRSGDYGGYG GEFGGYGGGG YGGGVGPYRG GEPPLGYSGR
301: YGGGGGGGYN RGGYGMGGGG GGGYGGGPGD MYGGPYGEPA GGYGGPSGSY GSGYGSGGYG GGGYRGSSGG YDMGGTGVGG GGGYPGGGGG SGGGSFYGGA
401: GGGGSRGGYG GGSGRYHPYG RIRHLEMATL ASNIVFIGKV ERRRRLKIDC RKKEKGRDQS ISPYKVIEIT PPPKSLGVRC LPHNLQCGEN VMIEGQTYTI
501: SAVTHRYQLR KGKYEPSERR LDVLSAARYV LNLYFDNLLQ NS
101: QDNHIINGKQ VEIKRTIPRG SMSSSNEIKT KKIFVGGIPS TVDDDEFKEF FMQFGELKEH QIMRDHATGR SRGFGFVTYE SEDMVDLLLA KGNRIELSGT
201: QVEIKKAEPK KPNSVTTPSR RFGDSRSNFG GGYGDGYGGG PGGGYGGPDG PYKSGGGYGG GRSGDYGGYG GEFGGYGGGG YGGGVGPYRG GEPPLGYSGR
301: YGGGGGGGYN RGGYGMGGGG GGGYGGGPGD MYGGPYGEPA GGYGGPSGSY GSGYGSGGYG GGGYRGSSGG YDMGGTGVGG GGGYPGGGGG SGGGSFYGGA
401: GGGGSRGGYG GGSGRYHPYG RIRHLEMATL ASNIVFIGKV ERRRRLKIDC RKKEKGRDQS ISPYKVIEIT PPPKSLGVRC LPHNLQCGEN VMIEGQTYTI
501: SAVTHRYQLR KGKYEPSERR LDVLSAARYV LNLYFDNLLQ NS
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.