Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030265.1-P | Field mustard | nucleus | 98.38 | 99.45 |
| AT2G22100.1 | Thale cress | nucleus | 72.43 | 70.16 |
| AT2G19380.1 | Thale cress | nucleus | 54.05 | 32.63 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.19 | 30.36 |
| CDY51790 | Canola | cytosol | 8.65 | 29.91 |
| CDX76950 | Canola | nucleus | 24.86 | 29.87 |
| CDY13782 | Canola | nucleus | 24.05 | 28.99 |
| CDX76015 | Canola | nucleus | 20.0 | 24.26 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 24.32 | 22.96 |
| CDX72106 | Canola | nucleus | 27.03 | 21.98 |
| CDY27186 | Canola | nucleus | 26.49 | 21.83 |
| CDY06947 | Canola | nucleus | 24.05 | 20.7 |
| CDY57580 | Canola | nucleus | 24.05 | 20.09 |
| Solyc04g011560.2.1 | Tomato | nucleus | 24.86 | 19.57 |
| CDY55846 | Canola | nucleus | 20.81 | 19.2 |
| PGSC0003DMT400016249 | Potato | nucleus | 24.59 | 18.5 |
| CDY26001 | Canola | nucleus | 20.27 | 18.43 |
| CDY25867 | Canola | nucleus | 20.0 | 18.27 |
| CDY31859 | Canola | nucleus | 11.89 | 18.26 |
| CDY33653 | Canola | nucleus | 12.43 | 18.18 |
| CDY47382 | Canola | golgi, plastid | 20.0 | 17.79 |
| CDY24106 | Canola | nucleus | 19.73 | 17.68 |
| CDX96615 | Canola | nucleus | 11.62 | 17.06 |
| CDY69197 | Canola | nucleus | 10.27 | 16.89 |
| CDY01349 | Canola | nucleus | 10.81 | 16.6 |
| CDY02889 | Canola | nucleus | 9.73 | 16.59 |
| CDY04769 | Canola | nucleus | 10.54 | 16.46 |
| CDY31508 | Canola | nucleus | 11.08 | 16.4 |
| CDX73279 | Canola | cytosol | 10.54 | 16.12 |
| CDX88283 | Canola | nucleus | 12.16 | 16.07 |
| CDY29496 | Canola | nucleus | 11.08 | 15.71 |
| CDY64698 | Canola | nucleus | 11.08 | 15.71 |
| CDX73451 | Canola | cytosol | 10.27 | 15.2 |
| CDY25759 | Canola | nucleus | 10.0 | 14.86 |
| CDY41556 | Canola | nucleus | 11.62 | 14.83 |
| CDX78261 | Canola | nucleus | 10.27 | 14.67 |
| CDY41557 | Canola | nucleus | 11.89 | 13.92 |
| CDX80046 | Canola | nucleus | 11.89 | 13.92 |
| CDX87594 | Canola | nucleus | 11.89 | 13.75 |
| CDY27523 | Canola | nucleus | 11.62 | 13.31 |
| CDY26229 | Canola | nucleus | 13.24 | 13.21 |
| CDY48016 | Canola | nucleus | 11.62 | 13.19 |
| CDY48318 | Canola | nucleus | 13.24 | 13.17 |
| CDX88432 | Canola | nucleus | 9.73 | 12.68 |
| CDX87460 | Canola | nucleus | 9.73 | 12.63 |
| CDY12068 | Canola | nucleus | 12.16 | 12.57 |
| CDX79253 | Canola | nucleus | 9.46 | 12.5 |
| CDY43360 | Canola | nucleus | 12.16 | 12.43 |
| CDY24201 | Canola | nucleus | 12.16 | 12.43 |
| CDX68024 | Canola | nucleus | 9.46 | 12.37 |
| CDY46642 | Canola | nucleus | 9.46 | 12.11 |
| CDX90262 | Canola | nucleus | 12.43 | 12.04 |
| CDY17173 | Canola | nucleus | 12.16 | 11.94 |
| CDY67299 | Canola | nucleus | 12.16 | 11.81 |
| CDX84689 | Canola | nucleus | 12.97 | 11.76 |
| CDY37724 | Canola | nucleus | 10.27 | 11.76 |
| CDY21356 | Canola | nucleus | 9.19 | 11.72 |
| CDY07975 | Canola | nucleus | 14.86 | 11.68 |
| CDX74030 | Canola | nucleus | 14.86 | 11.65 |
| CDY67263 | Canola | nucleus | 10.27 | 11.59 |
| CDX79527 | Canola | nucleus | 12.7 | 11.58 |
| CDY22136 | Canola | nucleus | 15.14 | 11.52 |
| CDY23739 | Canola | nucleus | 11.89 | 11.49 |
| CDY35966 | Canola | nucleus | 15.14 | 11.34 |
| CDY66272 | Canola | nucleus | 14.86 | 11.25 |
| CDX74070 | Canola | cytosol | 10.81 | 11.11 |
| CDY08023 | Canola | nucleus | 10.54 | 10.83 |
| CDY42724 | Canola | cytosol | 11.08 | 10.82 |
| CDY69852 | Canola | cytosol | 11.08 | 10.73 |
| CDY50131 | Canola | nucleus | 11.08 | 10.73 |
| CDX77783 | Canola | nucleus | 12.16 | 10.59 |
| CDY05301 | Canola | nucleus | 10.0 | 10.54 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 11.62 | 10.46 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 11.62 | 10.36 |
| CDY24657 | Canola | nucleus | 9.46 | 10.29 |
| CDY00446 | Canola | nucleus | 9.19 | 10.0 |
| CDY36357 | Canola | nucleus | 14.59 | 9.96 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 9.73 | 9.89 |
| CDY36753 | Canola | nucleus | 11.62 | 9.89 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 9.19 | 9.83 |
| CDY46690 | Canola | nucleus | 11.35 | 9.81 |
| CDX92807 | Canola | nucleus | 11.89 | 9.78 |
| CDY42577 | Canola | nucleus | 14.32 | 9.72 |
| CDY11989 | Canola | nucleus | 11.35 | 9.72 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 9.46 | 9.64 |
| CDY41059 | Canola | nucleus | 11.08 | 9.6 |
| CDY28918 | Canola | mitochondrion | 12.43 | 9.5 |
| CDY46689 | Canola | nucleus | 11.89 | 9.5 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 9.19 | 9.37 |
| CDX94301 | Canola | nucleus | 11.08 | 9.28 |
| CDX69279 | Canola | nucleus | 5.68 | 8.9 |
| CDX89316 | Canola | endoplasmic reticulum | 10.54 | 8.72 |
| CDX75170 | Canola | extracellular | 3.51 | 7.98 |
| CDY25957 | Canola | nucleus | 11.35 | 7.59 |
| CDY40554 | Canola | nucleus | 12.16 | 6.86 |
| CDX69277 | Canola | mitochondrion | 3.24 | 6.45 |
| CDY13339 | Canola | mitochondrion | 2.43 | 5.36 |
| CDY21399 | Canola | mitochondrion | 1.08 | 2.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FN26 | UniProt:A0A078FN26 | EnsemblPlants:CDY15850 | ProteinID:CDY15850 |
| ProteinID:CDY15850.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00090196001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44578 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE3AEE |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g12610DBnaA04g12610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN26]
Coordinates
chrLK032059:+:86125..87237
Molecular Weight (calculated)
41413.6 Da
IEP (calculated)
9.953
GRAVY (calculated)
-1.003
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDREDRKK EKREKKEKKE KKERKRREAE ELAVREKKIS KKHKSKSKAA EKPEKKPKKK SKKLQVVEEK PLKKSKKHKK PTESESESEE TVTVPPDDSH
101: PIKIPITTTT TTNESDSDSE FDKEDLKHLL ETYTKEELVN LIHKTAEKGS RLISAVLESA ELDSSKRNIF VRGLGWDTTH ETLKAAFEVY GEIEECSVVM
201: DKDTGRAKGY GFVMFKTRKG CREALRNPEK RMFNRTVSCN LAAAKPAGAG KAREPVESVK IDLTQSEVVL PGPPPGLDLG YGLDKGHKNV PQMYGGQNMP
301: FYGHGHAPPG FNPMYFMGNQ MGPGVPNFPM FGPGMMNHGP LNHMGMAGQY GGEGNGVGPG FDGERAWYLR
101: PIKIPITTTT TTNESDSDSE FDKEDLKHLL ETYTKEELVN LIHKTAEKGS RLISAVLESA ELDSSKRNIF VRGLGWDTTH ETLKAAFEVY GEIEECSVVM
201: DKDTGRAKGY GFVMFKTRKG CREALRNPEK RMFNRTVSCN LAAAKPAGAG KAREPVESVK IDLTQSEVVL PGPPPGLDLG YGLDKGHKNV PQMYGGQNMP
301: FYGHGHAPPG FNPMYFMGNQ MGPGVPNFPM FGPGMMNHGP LNHMGMAGQY GGEGNGVGPG FDGERAWYLR
001: MAKEGEERKK EKKEKKERKE RKRREAEELA VREKKISKKH KSKSKEEEKP EKSKKKSKKY EEVEEEEKSP SPSPSPKKSK ESKKKHKRSS DESEEIVDSK
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR
Arabidopsis Description
UBA1BUBP1-associated proteins 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SHZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.