Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68024 | Canola | nucleus | 93.21 | 92.23 |
| CDX87460 | Canola | nucleus | 85.0 | 83.51 |
| AT1G78260.1 | Thale cress | nucleus | 85.0 | 82.93 |
| CDX88432 | Canola | nucleus | 83.93 | 82.75 |
| CDY21356 | Canola | nucleus | 69.64 | 67.24 |
| CDY46642 | Canola | nucleus | 67.5 | 65.4 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 52.86 | 53.62 |
| KRH16743 | Soybean | nucleus | 52.14 | 53.28 |
| KRH18921 | Soybean | nucleus | 52.14 | 52.9 |
| CDY00446 | Canola | nucleus | 63.57 | 52.35 |
| Solyc04g074310.2.1 | Tomato | nucleus | 52.14 | 49.83 |
| KRH62327 | Soybean | nucleus | 48.93 | 47.74 |
| CDY51790 | Canola | cytosol | 18.21 | 47.66 |
| KRH53044 | Soybean | nucleus | 48.21 | 47.04 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.21 | 45.54 |
| CDY31859 | Canola | nucleus | 32.14 | 37.34 |
| CDY31508 | Canola | nucleus | 32.86 | 36.8 |
| CDY01349 | Canola | nucleus | 31.07 | 36.1 |
| CDY33653 | Canola | nucleus | 32.5 | 35.97 |
| CDX96615 | Canola | nucleus | 32.14 | 35.71 |
| CDY29496 | Canola | nucleus | 32.86 | 35.25 |
| CDY02889 | Canola | nucleus | 27.14 | 35.02 |
| CDX88283 | Canola | nucleus | 35.0 | 35.0 |
| CDY69197 | Canola | nucleus | 27.14 | 33.78 |
| CDX73279 | Canola | cytosol | 28.93 | 33.47 |
| CDY04769 | Canola | nucleus | 28.21 | 33.33 |
| CDX73451 | Canola | cytosol | 29.64 | 33.2 |
| CDY27523 | Canola | nucleus | 37.86 | 32.82 |
| CDY48016 | Canola | nucleus | 37.5 | 32.21 |
| CDY64698 | Canola | nucleus | 30.0 | 32.18 |
| CDY41556 | Canola | nucleus | 33.21 | 32.07 |
| CDX78261 | Canola | nucleus | 29.64 | 32.05 |
| CDX80046 | Canola | nucleus | 36.07 | 31.96 |
| CDY41557 | Canola | nucleus | 36.07 | 31.96 |
| CDY25759 | Canola | nucleus | 27.86 | 31.33 |
| CDX87594 | Canola | nucleus | 35.36 | 30.94 |
| CDY67263 | Canola | nucleus | 28.57 | 24.39 |
| CDY24106 | Canola | nucleus | 22.14 | 15.01 |
| CDY13782 | Canola | nucleus | 16.43 | 14.98 |
| CDY55846 | Canola | nucleus | 21.43 | 14.96 |
| CDY13339 | Canola | mitochondrion | 8.93 | 14.88 |
| CDY26001 | Canola | nucleus | 21.43 | 14.74 |
| CDX76950 | Canola | nucleus | 16.07 | 14.61 |
| CDY05301 | Canola | nucleus | 18.21 | 14.53 |
| CDY24657 | Canola | nucleus | 17.5 | 14.41 |
| CDY25867 | Canola | nucleus | 20.71 | 14.32 |
| CDY26229 | Canola | nucleus | 18.21 | 13.75 |
| CDY48318 | Canola | nucleus | 17.86 | 13.44 |
| CDY08023 | Canola | nucleus | 16.79 | 13.06 |
| CDX74070 | Canola | cytosol | 16.43 | 12.78 |
| CDX75170 | Canola | extracellular | 7.14 | 12.27 |
| CDY17173 | Canola | nucleus | 16.43 | 12.2 |
| CDY67299 | Canola | nucleus | 16.43 | 12.07 |
| CDX77783 | Canola | nucleus | 18.21 | 12.0 |
| CDX72106 | Canola | nucleus | 19.29 | 11.87 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 17.5 | 11.81 |
| CDY27186 | Canola | nucleus | 18.93 | 11.8 |
| CDY50131 | Canola | nucleus | 16.07 | 11.78 |
| CDY37724 | Canola | nucleus | 13.57 | 11.76 |
| CDY21399 | Canola | mitochondrion | 6.07 | 11.72 |
| CDY06947 | Canola | nucleus | 17.86 | 11.63 |
| CDX76015 | Canola | nucleus | 12.5 | 11.48 |
| CDY24201 | Canola | nucleus | 14.64 | 11.33 |
| CDY43360 | Canola | nucleus | 14.64 | 11.33 |
| CDY57580 | Canola | nucleus | 17.86 | 11.29 |
| CDY07975 | Canola | nucleus | 18.93 | 11.25 |
| CDY41059 | Canola | nucleus | 17.14 | 11.24 |
| CDX74030 | Canola | nucleus | 18.93 | 11.23 |
| CDY12068 | Canola | nucleus | 14.29 | 11.17 |
| CDY22136 | Canola | nucleus | 19.29 | 11.11 |
| CDY23739 | Canola | nucleus | 15.0 | 10.97 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.07 | 10.95 |
| CDY35966 | Canola | nucleus | 19.29 | 10.93 |
| CDY42724 | Canola | cytosol | 14.64 | 10.82 |
| CDY69852 | Canola | cytosol | 14.64 | 10.73 |
| CDY66272 | Canola | nucleus | 18.57 | 10.63 |
| CDY28918 | Canola | mitochondrion | 18.21 | 10.54 |
| CDX90262 | Canola | nucleus | 14.29 | 10.47 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.57 | 10.44 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 12.86 | 10.4 |
| CDX79527 | Canola | nucleus | 15.0 | 10.34 |
| CDX84689 | Canola | nucleus | 15.0 | 10.29 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.21 | 10.19 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.5 | 9.64 |
| CDY15850 | Canola | nucleus | 12.5 | 9.46 |
| CDY36753 | Canola | nucleus | 14.64 | 9.43 |
| CDY46690 | Canola | nucleus | 14.29 | 9.35 |
| CDX69279 | Canola | nucleus | 7.86 | 9.32 |
| CDY47382 | Canola | golgi, plastid | 13.57 | 9.13 |
| CDX94301 | Canola | nucleus | 14.29 | 9.05 |
| CDX89316 | Canola | endoplasmic reticulum | 14.29 | 8.95 |
| CDX92807 | Canola | nucleus | 14.29 | 8.89 |
| CDY36357 | Canola | nucleus | 17.14 | 8.86 |
| CDY42577 | Canola | nucleus | 17.14 | 8.81 |
| CDY11989 | Canola | nucleus | 13.57 | 8.8 |
| CDY25957 | Canola | nucleus | 17.14 | 8.68 |
| CDY46689 | Canola | nucleus | 14.29 | 8.64 |
| CDY40554 | Canola | nucleus | 17.86 | 7.62 |
| CDX69277 | Canola | mitochondrion | 2.86 | 4.3 |
Protein Annotations
| EnsemblPlants:CDX79253 | EnsemblPlantsGene:GSBRNA2T00131880001 | Gene3D:3.30.70.330 | GO:A0A078CVN6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX79253 | ProteinID:CDX79253.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE92E7 | MapMan:35.1 | : |
Description
BnaC06g20500D
Coordinates
chrLK031817:+:767671..771325
Molecular Weight (calculated)
30923.6 Da
IEP (calculated)
8.155
GRAVY (calculated)
-0.827
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPTSYYRSP FGDTTYTKVF VGGLAWETPT EEMRRYFDQF GEILEAVIIT DKNTGKSKGY GFVTFQEADS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQKGS PSQYQSGGPS AYTGMAAPLP PASAAHQLMY PSYGYTYNPD QFRYHQLQQA QYYQQQQQLY GGGATSPSAA TIMASPYYYG CSLPASRMPY
201: QHHHPHLPQP YNPQQQQQQQ HQRFTSSFLV YPSSSPFSSP LQGLLSSTEE SEAPQQVSAK VEATTTPEST SSNNKEPTSS
101: PPRGRGQKGS PSQYQSGGPS AYTGMAAPLP PASAAHQLMY PSYGYTYNPD QFRYHQLQQA QYYQQQQQLY GGGATSPSAA TIMASPYYYG CSLPASRMPY
201: QHHHPHLPQP YNPQQQQQQQ HQRFTSSFLV YPSSSPFSSP LQGLLSSTEE SEAPQQVSAK VEATTTPEST SSNNKEPTSS
001: MSQTSYYRSP FGDTTYTKVF VGGLAWETPT DEMRRYFEQF GEILEAVIIT DKNTGKSKGY GFVTFRESDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
Arabidopsis Description
At1g78260 [Source:UniProtKB/TrEMBL;Acc:Q8LF90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.