Factsheet for Solyc04g074310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g05840.t01	Wine grape	nucleus	65.19	69.2
KRH18921	Soybean	nucleus	60.41	64.13
KRH16743	Soybean	nucleus	59.73	63.87
KRH62327	Soybean	nucleus	57.68	58.88
KRH53044	Soybean	nucleus	57.0	58.19
AT1G78260.1	Thale cress	nucleus	52.9	54.01
CDX87460	Canola	nucleus	52.22	53.68
CDX88432	Canola	nucleus	51.88	53.52
CDX68024	Canola	nucleus	51.19	53.0
Bra003651.1-P	Field mustard	nucleus	48.81	52.77
AT1G22330.1	Thale cress	nucleus	52.22	52.58
CDX79253	Canola	nucleus	49.83	52.14
Bra031385.1-P	Field mustard	nucleus	50.85	51.38
CDY21356	Canola	nucleus	50.51	51.03
CDY46642	Canola	nucleus	50.17	50.87
Bra012321.1-P	Field mustard	nucleus	49.83	50.52
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	35.84	43.57
CDY00446	Canola	nucleus	48.46	41.76
Solyc04g049920.2.1	Tomato	nucleus	30.38	36.93
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	32.76	36.78
Solyc02g082270.2.1	Tomato	nucleus	35.15	36.52
Solyc03g121710.2.1	Tomato	nucleus	14.33	15.61
Solyc12g014210.1.1	Tomato	nucleus	17.41	15.22
Solyc02g021560.2.1	Tomato	nucleus	21.16	14.39
Solyc09g072790.2.1	Tomato	nucleus	18.43	13.71
Solyc06g062740.1.1	Tomato	cytosol	9.22	13.71
Solyc07g045240.2.1	Tomato	nucleus	15.36	13.12
Solyc02g093340.2.1	Tomato	nucleus	16.72	12.6
Solyc03g005680.2.1	Tomato	nucleus	17.75	12.18
Solyc02g090910.2.1	Tomato	nucleus	15.36	11.97
Solyc01g008970.2.1	Tomato	nucleus	15.02	11.7
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	14.68	11.59
Solyc10g081330.1.1	Tomato	nucleus	16.04	11.27
Solyc09g090520.2.1	Tomato	nucleus	18.09	11.16
Solyc02g064540.1.1	Tomato	nucleus	13.65	10.81
Solyc04g077520.2.1	Tomato	nucleus	12.29	10.56
Solyc06g062730.1.1	Tomato	nucleus	12.97	10.35
Solyc04g011560.2.1	Tomato	nucleus	16.04	10.0
Solyc07g048030.2.1	Tomato	nucleus	14.33	9.61
Solyc04g014820.2.1	Tomato	cytosol	8.19	8.96
Solyc12g006180.1.1	Tomato	nucleus	12.29	8.22
Solyc10g006050.2.1	Tomato	nucleus	11.26	7.62
Solyc12g014600.1.1	Tomato	nucleus	11.26	7.55
Solyc11g012470.1.1	Tomato	nucleus	10.24	7.01

Protein Annotations

EnsemblPlants:Solyc04g074310.2.1	EnsemblPlantsGene:Solyc04g074310.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44828	PANTHER:PTHR44828:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002765630	UniProt:K4BTW9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:+:60317134..60323729

Molecular Weight (calculated)

31626.4 Da

IEP (calculated)

8.150

GRAVY (calculated)

-0.700

Length

293 amino acids

Sequence
(BLAST)

001: MAYQHYRSPF GDTTYTKVFV GGLAWETPTD VMRRYFEQFG EILEAVIITD KNTGKSKGYG FVTYRDPESA RRACDNPNPV IDGRRANCNI ASLGRPRPSP
101: PRGRGQGGNP YQGGGIPQGA SSSSYSGVAG GAAAPLPLHP PPATPMIYSP YGYATYPPDY YHQAAGMYNP GTYQQAAAAA HYYQQMYGSS SSPSPAYYYG
201: YSMQGSRGTF SAATQRFQSP TASYLYYPTT TAHHLPADAA SFTPPPPPLL QHPPHAATTR LQFPSPTTES QNPQQTSEDT TEVGAVTTES PNT

Best Arabidopsis Sequence Match ( AT1G22330.1 )
(BLAST)

001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.