Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058431 | Potato | nucleus | 91.22 | 70.0 |
| KRH14673 | Soybean | nucleus | 56.65 | 43.12 |
| KRH73477 | Soybean | nucleus | 56.38 | 42.74 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 58.51 | 42.47 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 48.67 | 39.27 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 46.81 | 38.85 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 46.54 | 38.55 |
| GSMUA_Achr10P... | Banana | nucleus | 23.4 | 38.1 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 43.88 | 38.02 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 47.87 | 37.5 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 48.4 | 37.3 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 47.34 | 37.08 |
| EES02736 | Sorghum | plastid | 45.21 | 36.64 |
| Os01t0265800-01 | Rice | nucleus | 47.34 | 36.33 |
| HORVU6Hr1G054690.5 | Barley | plastid | 16.49 | 32.98 |
| Solyc10g081330.1.1 | Tomato | nucleus | 36.17 | 32.61 |
| Solyc12g014210.1.1 | Tomato | nucleus | 27.66 | 31.04 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 36.44 | 31.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.11 | 30.77 |
| KXG30578 | Sorghum | nucleus | 30.05 | 30.38 |
| Os02t0602600-00 | Rice | nucleus | 28.99 | 28.24 |
| Solyc02g021560.2.1 | Tomato | nucleus | 30.85 | 26.91 |
| Os04t0636900-02 | Rice | nucleus | 35.9 | 26.21 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 35.37 | 26.13 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 35.37 | 26.13 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 28.72 | 26.09 |
| Solyc04g011560.2.1 | Tomato | nucleus | 32.45 | 25.96 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 35.11 | 25.93 |
| Zm00001d002141_P006 | Maize | nucleus | 35.9 | 25.91 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 35.64 | 25.72 |
| EES12939 | Sorghum | nucleus | 35.37 | 25.24 |
| EES10068 | Sorghum | nucleus | 26.33 | 22.97 |
| Solyc06g062740.1.1 | Tomato | cytosol | 11.97 | 22.84 |
| Solyc03g121710.2.1 | Tomato | nucleus | 15.43 | 21.56 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 12.77 | 19.92 |
| Solyc04g049920.2.1 | Tomato | nucleus | 11.44 | 17.84 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 18.62 | 17.24 |
| Solyc07g045240.2.1 | Tomato | nucleus | 14.89 | 16.33 |
| Solyc04g014820.2.1 | Tomato | cytosol | 11.44 | 16.04 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 10.64 | 15.33 |
| Solyc04g074310.2.1 | Tomato | nucleus | 11.7 | 15.02 |
| Solyc02g082270.2.1 | Tomato | nucleus | 11.17 | 14.89 |
| Solyc06g062730.1.1 | Tomato | nucleus | 14.1 | 14.44 |
| Solyc02g093340.2.1 | Tomato | nucleus | 14.1 | 13.62 |
| Solyc02g064540.1.1 | Tomato | nucleus | 13.3 | 13.51 |
| Solyc04g077520.2.1 | Tomato | nucleus | 12.23 | 13.49 |
| Solyc09g072790.2.1 | Tomato | nucleus | 14.1 | 13.45 |
| Solyc02g090910.2.1 | Tomato | nucleus | 13.03 | 13.03 |
| Solyc03g005680.2.1 | Tomato | nucleus | 12.5 | 11.01 |
| Solyc09g090520.2.1 | Tomato | nucleus | 13.56 | 10.74 |
| Solyc07g048030.2.1 | Tomato | nucleus | 11.44 | 9.84 |
| Solyc11g012470.1.1 | Tomato | nucleus | 10.9 | 9.58 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 9.31 | 9.43 |
| Solyc10g006050.2.1 | Tomato | nucleus | 10.64 | 9.24 |
| Solyc12g006180.1.1 | Tomato | nucleus | 10.64 | 9.13 |
| Solyc12g014600.1.1 | Tomato | nucleus | 10.11 | 8.7 |
Protein Annotations
| EnsemblPlants:Solyc01g008970.2.1 | EnsemblPlantsGene:Solyc01g008970.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF4 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000276332A | UniProt:K4AT93 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1:-:2988194..2990000
Molecular Weight (calculated)
41807.8 Da
IEP (calculated)
4.360
GRAVY (calculated)
-1.015
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRKTRAS EPSQPAEEPV EIKQEPEVEP AQEEEYENDA VEVEEEEAVH EDEEEQDPEE EEEEGGEDDE EEEETPGSGN DAVEGDNEKS EQVNGGGAEV
101: KIEEGNEEDL EDEPLENLLE PFTKDQLTAL IKEALAKYPD FKENIQKLAD KDPAHRKIFV HGLGWDTTAE TLTSVFGSYG EIEDCKAVAD KVSGKSKGYG
201: FILFKHRSGA RKALKEPQKK IGTRMTSCQL ASAGPVPAPP PSTAAAPVSE YTQRKIFVSN VAADLEPQKL LEYFSKFGEV EEGPLGLDKQ SGKPKGFCLF
301: VYKTVEGARK ALEEPHKTFE GHTLHCQKAI DGPKHSKNFH QQQQPQSQQH YPHCDPSSWT GTDSAVSYTR SWFGDR
101: KIEEGNEEDL EDEPLENLLE PFTKDQLTAL IKEALAKYPD FKENIQKLAD KDPAHRKIFV HGLGWDTTAE TLTSVFGSYG EIEDCKAVAD KVSGKSKGYG
201: FILFKHRSGA RKALKEPQKK IGTRMTSCQL ASAGPVPAPP PSTAAAPVSE YTQRKIFVSN VAADLEPQKL LEYFSKFGEV EEGPLGLDKQ SGKPKGFCLF
301: VYKTVEGARK ALEEPHKTFE GHTLHCQKAI DGPKHSKNFH QQQQPQSQQH YPHCDPSSWT GTDSAVSYTR SWFGDR
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.