Factsheet for HORVU2Hr1G116230.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G116150.4	Barley	nucleus	82.76	81.16
Os04t0636900-02	Rice	nucleus	67.0	52.82
Zm00001d026397_P001	Maize	nucleus, plasma membrane	64.29	50.1
EES12939	Sorghum	nucleus	64.53	49.72
Zm00001d002141_P006	Maize	nucleus	63.05	49.14
HORVU6Hr1G054690.5	Barley	plastid	11.58	25.0
GSMUA_AchrUn_...	Banana	nucleus	23.4	22.14
KRG94993	Soybean	nucleus	26.11	22.13
Bra007277.1-P	Field mustard	nucleus	24.14	21.83
CDY27186	Canola	nucleus	24.14	21.83
CDX72106	Canola	nucleus	24.14	21.54
CDY06947	Canola	nucleus	22.41	21.16
Bra016954.1-P	Field mustard	nucleus	22.66	20.91
KRH66628	Soybean	nucleus	24.63	20.58
CDY57580	Canola	nucleus	22.17	20.32
AT3G56860.10	Thale cress	nucleus	23.89	20.29
GSMUA_Achr4P09210_001	Banana	nucleus	21.92	20.14
CDX76015	Canola	nucleus	15.02	20.0
VIT_08s0056g00690.t01	Wine grape	nucleus	22.66	19.87
AT2G41060.3	Thale cress	nucleus	21.92	19.73
Bra014667.1-P	Field mustard	nucleus	14.53	19.34
HORVU3Hr1G053990.1	Barley	nucleus	20.94	19.27
KRH14673	Soybean	nucleus	22.91	18.83
KRH73477	Soybean	nucleus	22.91	18.75
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	23.89	18.73
Solyc01g008970.2.1	Tomato	nucleus	17.24	18.62
PGSC0003DMT400058431	Potato	nucleus	22.41	18.57
HORVU3Hr1G037280.1	Barley	nucleus, plastid	22.17	18.44
CDY47382	Canola	golgi, plastid	14.78	14.42
HORVU7Hr1G087550.1	Barley	nucleus	12.32	12.53
HORVU6Hr1G040220.5	Barley	plastid	13.05	11.42
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	10.1	11.05
HORVU7Hr1G060930.1	Barley	plasma membrane	9.36	10.73
HORVU1Hr1G057660.1	Barley	cytosol	9.61	10.71
HORVU0Hr1G008280.1	Barley	nucleus	12.07	10.58
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	9.11	10.22
HORVU1Hr1G039790.1	Barley	nucleus	12.32	9.8
GSMUA_Achr10P...	Banana	nucleus	5.42	9.52
HORVU2Hr1G061380.2	Barley	nucleus	8.37	9.14
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	6.4	8.7
HORVU6Hr1G078060.1	Barley	plastid	5.91	7.59
HORVU4Hr1G063360.1	Barley	nucleus	4.93	7.3
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	5.42	7.03
HORVU7Hr1G093450.6	Barley	nucleus	4.93	6.8
HORVU4Hr1G057110.23	Barley	nucleus	5.17	6.77
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	5.17	6.33
HORVU6Hr1G070150.1	Barley	plastid	2.46	5.99
HORVU6Hr1G070140.3	Barley	plastid	2.22	5.77
HORVU7Hr1G036900.1	Barley	cytosol, plastid	0.25	1.49

Protein Annotations

EnsemblPlants:HORVU2Hr1G116230.1	EnsemblPlantsGene:HORVU2Hr1G116230	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	ncoils:Coil
PANTHER:PTHR44578	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:737298600..737299888

Molecular Weight (calculated)

37304.1 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.255

Length

406 amino acids

Sequence
(BLAST)

001: EEGGEACLEA QGAPRAAPPR EEESSSNPSP TRIGKWRPSW AVPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRLA FCHLAASGPA PPASQSQNPS
101: SNASSGAANN SAPASSSSQA DNMQRKIFVG NVHADVDVNR LYEYFSQFGE IEEGPLGFDK STGKPKGFAL FVYKSVDSAR RALEEPMRSF DGKMLNVQKA
201: IDGRTKGTSG SNSSANNANA TAASTQMTVP SIAAINPYDP SAYGAAAVHD MGFAQQAALL GMGAQQQAFA QPNTAMLAMM AAAMQNPAML ASLNPAFAAA
301: ALGAGGQAGI PGFGAQGFGT QGFGAAGINF PNASGLQGAA AYQGGPPGFQ GSPGFPTSAG FQVGQAASQS GTTAAATGAA AYQTGAAGQG QVSNSQIGGT
401: GFQGGY

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.