Factsheet for Os04t0636900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G116150.4	Barley	nucleus	65.24	81.16
EES12939	Sorghum	nucleus	82.33	80.46
Zm00001d026397_P001	Maize	nucleus, plasma membrane	79.81	78.89
TraesCS2D01G529100.1	Wheat	nucleus	77.67	78.59
Zm00001d002141_P006	Maize	nucleus	79.22	78.31
TraesCS2A01G526400.1	Wheat	nucleus	77.09	78.0
TraesCS2B01G556700.1	Wheat	nucleus	77.09	78.0
HORVU2Hr1G116230.1	Barley	nucleus	52.82	67.0
GSMUA_Achr10P...	Banana	nucleus	21.55	48.05
GSMUA_AchrUn_...	Banana	nucleus	35.92	43.12
GSMUA_Achr4P09210_001	Banana	nucleus	33.98	39.59
CDY06947	Canola	nucleus	31.07	37.21
Bra016954.1-P	Field mustard	nucleus	31.07	36.36
Bra007277.1-P	Field mustard	nucleus	31.65	36.3
CDY27186	Canola	nucleus	31.46	36.08
KRG94993	Soybean	nucleus	33.4	35.91
Solyc01g008970.2.1	Tomato	nucleus	26.21	35.9
CDX72106	Canola	nucleus	31.65	35.82
CDY57580	Canola	nucleus	30.68	35.67
AT2G41060.3	Thale cress	nucleus	31.07	35.48
KRH66628	Soybean	nucleus	32.62	34.57
CDX76015	Canola	nucleus	20.39	34.43
AT3G56860.10	Thale cress	nucleus	31.65	34.1
Bra014667.1-P	Field mustard	nucleus	20.0	33.77
VIT_08s0056g00690.t01	Wine grape	nucleus	29.9	33.26
Os01t0265800-01	Rice	nucleus	31.26	32.86
Os01t0614500-01	Rice	nucleus	28.16	32.44
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	32.43	32.24
KRH14673	Soybean	nucleus	30.68	31.98
KRH73477	Soybean	nucleus	30.68	31.85
PGSC0003DMT400058431	Potato	nucleus	29.9	31.43
Os02t0602600-00	Rice	nucleus	22.72	30.31
Os02t0755400-01	Rice	plastid	8.74	25.57
CDY47382	Canola	golgi, plastid	20.19	25.0
Os02t0714000-01	Rice	nucleus, plastid	11.07	19.86
Os01t0876800-00	Rice	nucleus	11.07	19.0
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	9.9	18.55
Os06t0566100-01	Rice	cytosol, nucleus	10.49	18.49
Os01t0945800-01	Rice	nucleus	12.82	18.18
Os02t0221500-01	Rice	nucleus	13.79	17.88
Os03t0286500-01	Rice	cytosol, nucleus, plastid	10.49	17.42
Os01t0958500-01	Rice	nucleus	10.49	17.42
Os08t0320100-01	Rice	nucleus	11.65	17.14
Os06t0220600-01	Rice	plastid	11.26	16.91
Os05t0376000-00	Rice	cytosol	6.6	16.27
Os07t0584500-01	Rice	nucleus	14.76	16.1
Os11t0637700-01	Rice	plasma membrane	14.56	16.06
Os07t0124600-01	Rice	nucleus	11.46	15.65
Os08t0492100-02	Rice	nucleus	8.93	10.55

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4337147	EMBL:AK058405	EMBL:AK101408	ProteinID:BAF15936.1
ProteinID:BAS91226.1	ProteinID:CAD41732.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os04g0636900	EnsemblPlants:Os04t0636900-02	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44578	UniProt:Q0J9Q1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00001B1E20	RefSeq:XP_015635574.1	RefSeq:XP_015635576.1	RefSeq:XP_015635577.1	SEG:seg

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os04t0636900-01);RNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os04t0636900-02)

Coordinates

chr4:-:32390377..32392459

Molecular Weight (calculated)

52207.7 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.289

Length

515 amino acids

Sequence
(BLAST)

001: MAPKKRKADP AESPVASSEA GAGTNHHQET PSSELKPRGT IYFPITDDPP EPSAEGGAEG EDGAGGDDDE EDIAKLLEPL SREQLVALLR TAAETTPATM
101: AAVRRAAEAD PASRKLFVHG LGWGAGADDL RSAFSRFGEL EDCRVISDKQ SGRSKGYGFV LFRSRRSALR ALRRPQLQIG GRLAFCHLAA SGPAPPTSQS
201: QNPSSNTNAN SGAANNAGSA SSSQPDNMQR KIFVGNVHAD VDVDRLYEYF SQFGEIEEGP LGFDKTTGKP KGFALFVYKS VESARRALEE PTRNFDGKML
301: NVQKAIDGRT KNTPGMNANS NPSGTAASAA AAAAAAQMTA PATAAITPYD ASAYGATAVP DLGYAQQAAM LGLGAQQQAF AQPNAAMLAM MAAAMQNPAM
401: LATLNPAFAA AALGAGGQQV HAAGIPGFGA QGFGTQGFAA GAAAFPNAAG VQAPPGFQGP PGFQTSAGFQ VGQAASQAGT AAAAAAGAAG YQAAAAGQGQ
501: VPGTQIGGAG FQGGF

Best Arabidopsis Sequence Match ( AT3G56860.9 )
(BLAST)

001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH

Arabidopsis Description

UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.