Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052212_P001 | Maize | nucleus | 53.41 | 58.39 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 52.27 | 51.98 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 44.89 | 49.69 |
| AT5G53720.1 | Thale cress | cytosol | 27.27 | 48.0 |
| CDY51790 | Canola | cytosol | 25.57 | 42.06 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 26.14 | 41.07 |
| TraesCS6B01G348100.1 | Wheat | plastid | 72.16 | 40.84 |
| HORVU6Hr1G078060.1 | Barley | plastid | 73.3 | 40.82 |
| TraesCS6D01G297300.1 | Wheat | plastid | 71.59 | 40.38 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 47.16 | 35.17 |
| Zm00001d018103_P002 | Maize | plasma membrane | 61.36 | 33.96 |
| KXG30724 | Sorghum | plastid | 59.66 | 33.87 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 46.02 | 33.61 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 49.43 | 32.95 |
| Os06t0220600-01 | Rice | plastid | 59.66 | 30.61 |
| AT5G53680.1 | Thale cress | cytosol | 28.98 | 30.18 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 28.98 | 29.14 |
| PGSC0003DMT400025900 | Potato | nucleus | 47.16 | 28.92 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 43.18 | 27.64 |
| Os02t0714000-01 | Rice | nucleus, plastid | 44.89 | 27.53 |
| KRH53608 | Soybean | nucleus | 37.5 | 26.83 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 72.73 | 26.28 |
| KRH64318 | Soybean | nucleus | 36.93 | 25.29 |
| Os01t0876800-00 | Rice | nucleus | 39.2 | 23.0 |
| Os01t0958500-01 | Rice | nucleus | 39.77 | 22.58 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 38.64 | 21.94 |
| Bra029612.1-P | Field mustard | nucleus | 25.57 | 15.68 |
| AT3G06970.1 | Thale cress | nucleus | 25.0 | 13.88 |
| CDY24657 | Canola | nucleus | 26.14 | 13.53 |
| CDY05301 | Canola | nucleus | 26.7 | 13.39 |
| CDY08023 | Canola | nucleus | 26.14 | 12.78 |
| CDX74070 | Canola | cytosol | 25.57 | 12.5 |
| Bra001228.1-P | Field mustard | cytosol | 25.57 | 12.43 |
| Os01t0614500-01 | Rice | nucleus | 30.11 | 11.86 |
| Os01t0265800-01 | Rice | nucleus | 29.55 | 10.61 |
| Os08t0320100-01 | Rice | nucleus | 21.02 | 10.57 |
| Os02t0221500-01 | Rice | nucleus | 23.3 | 10.33 |
| Os02t0602600-00 | Rice | nucleus | 22.16 | 10.1 |
| Os07t0124600-01 | Rice | nucleus | 18.75 | 8.75 |
| Os04t0636900-02 | Rice | nucleus | 25.57 | 8.74 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 14.2 | 8.56 |
| Os08t0492100-02 | Rice | nucleus | 21.02 | 8.49 |
| Os07t0584500-01 | Rice | nucleus | 22.73 | 8.47 |
| Os01t0945800-01 | Rice | nucleus | 17.05 | 8.26 |
| Os11t0637700-01 | Rice | plasma membrane | 21.59 | 8.14 |
| Os05t0376000-00 | Rice | cytosol | 9.66 | 8.13 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AK106338 | ProteinID:BAF10076.1 | ProteinID:BAS80986.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| EnsemblPlantsGene:Os02g0755400 | EnsemblPlants:Os02t0755400-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | UniProt:Q0DXG2 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000DF087B | SEG:seg |
Description
Similar to RNA recognition motif-containing protein SEB-4. (Os02t0755400-01)
Coordinates
chr2:+:31781578..31787144
Molecular Weight (calculated)
18513.7 Da
IEP (calculated)
10.338
GRAVY (calculated)
-0.651
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSSTSS AGSAAPAHAP AAGGAGGGGS SGVPNHRTRF GDTTLTKVFV GGLAWETPSK GLQDHFQQYG EILEAVVITD RETSRSKGYG FVTFREPESA
101: REAVRNPNPT IGGRRANCNI ASMGPPRPSP SRGRAPRGSL FPDQPHMGPQ PYMGGRLPPQ HMTAPPQQMY YHPQFG
101: REAVRNPNPT IGGRRANCNI ASMGPPRPSP SRGRAPRGSL FPDQPHMGPQ PYMGGRLPPQ HMTAPPQQMY YHPQFG
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.