Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G216600.2 | Wheat | cytosol | 89.19 | 89.38 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 87.71 | 88.09 |
| EER97452 | Sorghum | nucleus | 87.71 | 87.9 |
| Zm00001d006704_P002 | Maize | nucleus | 85.81 | 83.68 |
| Zm00001d019079_P001 | Maize | cytosol | 78.39 | 82.59 |
| EER98147 | Sorghum | nucleus | 79.24 | 82.56 |
| EER96020 | Sorghum | nucleus | 79.24 | 82.2 |
| Zm00001d007772_P001 | Maize | nucleus | 78.18 | 82.18 |
| Zm00001d019084_P002 | Maize | nucleus | 76.06 | 79.07 |
| TraesCS2A01G190400.1 | Wheat | plastid | 87.92 | 78.15 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 86.23 | 75.23 |
| Zm00001d019086_P001 | Maize | nucleus | 78.39 | 69.55 |
| Os11t0637700-01 | Rice | plasma membrane | 58.9 | 59.53 |
| Solyc04g014820.2.1 | Tomato | cytosol | 33.26 | 58.58 |
| KRH74025 | Soybean | nucleus | 58.9 | 58.53 |
| KRH14098 | Soybean | nucleus | 58.69 | 57.83 |
| GSMUA_Achr10P... | Banana | nucleus | 53.6 | 57.5 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 57.63 | 56.9 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 57.42 | 56.69 |
| GSMUA_Achr10P... | Banana | nucleus | 55.08 | 56.52 |
| KRG98573 | Soybean | nucleus | 57.2 | 56.37 |
| PGSC0003DMT400037271 | Potato | nucleus | 55.72 | 55.96 |
| KRH46297 | Soybean | nucleus | 56.78 | 55.95 |
| PGSC0003DMT400076643 | Potato | nucleus | 56.14 | 55.91 |
| KRH73860 | Soybean | nucleus | 56.36 | 55.77 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 51.91 | 55.43 |
| Solyc12g014600.1.1 | Tomato | nucleus | 50.85 | 54.92 |
| Solyc07g048030.2.1 | Tomato | nucleus | 50.64 | 54.69 |
| PGSC0003DMT400074192 | Potato | nucleus | 54.66 | 54.43 |
| KRH14284 | Soybean | nucleus | 55.08 | 54.39 |
| Solyc10g006050.2.1 | Tomato | nucleus | 49.36 | 53.81 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 56.78 | 53.6 |
| PGSC0003DMT400034757 | Potato | nucleus | 52.75 | 53.21 |
| Solyc11g012470.1.1 | Tomato | nucleus | 47.88 | 52.8 |
| Solyc12g006180.1.1 | Tomato | nucleus | 48.73 | 52.51 |
| PGSC0003DMT400060554 | Potato | nucleus | 50.21 | 50.43 |
| CDY07975 | Canola | nucleus | 49.79 | 49.89 |
| CDX74030 | Canola | nucleus | 49.58 | 49.58 |
| Bra001267.1-P | Field mustard | nucleus | 49.36 | 49.47 |
| AT3G07810.2 | Thale cress | nucleus | 51.69 | 49.29 |
| CDY66272 | Canola | nucleus | 50.85 | 49.08 |
| CDY35966 | Canola | nucleus | 51.27 | 48.99 |
| CDY22136 | Canola | nucleus | 50.42 | 48.97 |
| Bra040031.1-P | Field mustard | nucleus | 50.42 | 48.97 |
| Bra029681.1-P | Field mustard | nucleus | 51.69 | 48.7 |
| AT4G26650.1 | Thale cress | nucleus | 46.82 | 48.57 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 42.58 | 48.43 |
| Bra024928.1-P | Field mustard | nucleus | 43.01 | 48.33 |
| Bra017475.1-P | Field mustard | nucleus | 43.43 | 48.01 |
| CDY41059 | Canola | nucleus | 43.43 | 48.01 |
| CDX77783 | Canola | nucleus | 43.22 | 48.0 |
| CDY50131 | Canola | nucleus | 38.77 | 47.91 |
| CDX94301 | Canola | nucleus | 44.7 | 47.74 |
| CDY36753 | Canola | nucleus | 43.86 | 47.59 |
| Bra028973.1-P | Field mustard | nucleus | 43.64 | 47.58 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 45.55 | 47.46 |
| Bra021062.1-P | Field mustard | nucleus | 39.41 | 47.45 |
| CDX92807 | Canola | nucleus | 45.13 | 47.33 |
| CDY11989 | Canola | nucleus | 43.01 | 46.99 |
| CDX89316 | Canola | endoplasmic reticulum | 44.07 | 46.53 |
| Bra019094.1-P | Field mustard | nucleus | 45.34 | 46.22 |
| CDY46689 | Canola | nucleus | 45.34 | 46.22 |
| CDY46690 | Canola | nucleus | 41.74 | 46.03 |
| Bra022145.1-P | Field mustard | nucleus | 44.7 | 45.87 |
| Bra026413.1-P | Field mustard | nucleus | 41.1 | 45.86 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 39.41 | 45.26 |
| CDY28918 | Canola | mitochondrion | 45.34 | 44.21 |
| AT5G55550.10 | Thale cress | nucleus | 45.55 | 42.41 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 58.26 | 40.5 |
| CDX75170 | Canola | extracellular | 12.92 | 37.42 |
| CDY25957 | Canola | nucleus | 43.43 | 37.07 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 22.25 | 35.96 |
| Os08t0320100-01 | Rice | nucleus | 25.42 | 34.29 |
| CDY40554 | Canola | nucleus | 44.7 | 32.16 |
| Os02t0221500-01 | Rice | nucleus | 26.06 | 30.98 |
| Os07t0124600-01 | Rice | nucleus | 23.31 | 29.18 |
| Os05t0376000-00 | Rice | cytosol | 12.71 | 28.71 |
| Os01t0945800-01 | Rice | nucleus | 21.19 | 27.55 |
| Os02t0755400-01 | Rice | plastid | 8.47 | 22.73 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 12.5 | 21.45 |
| Os02t0714000-01 | Rice | nucleus, plastid | 12.71 | 20.91 |
| Os01t0876800-00 | Rice | nucleus | 12.92 | 20.33 |
| Os01t0958500-01 | Rice | nucleus | 13.35 | 20.32 |
| Os08t0492100-02 | Rice | nucleus | 18.22 | 19.72 |
| Os01t0614500-01 | Rice | nucleus | 18.01 | 19.02 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 11.86 | 18.06 |
| Os06t0220600-01 | Rice | plastid | 12.08 | 16.62 |
| Os02t0602600-00 | Rice | nucleus | 12.71 | 15.54 |
| Os01t0265800-01 | Rice | nucleus | 15.68 | 15.1 |
| Os04t0636900-02 | Rice | nucleus | 16.1 | 14.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4343740 | EMBL:AK067725 | ProteinID:BAC55617.2 | ProteinID:BAF22034.1 |
| ProteinID:BAT02370.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os07g0584500 | EnsemblPlants:Os07t0584500-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 | UniProt:Q84ZR9 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000212F76 | RefSeq:XP_015646811.1 | RefSeq:XP_015646812.1 | SEG:seg |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-02)
Coordinates
chr7:+:23704154..23708928
Molecular Weight (calculated)
50480.4 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.562
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADSGKLFV GGISWETDED RLREYFSRFG EVTEAVIMRD RNTGRARGFG FVVFTDAGVA ERVTMDKHMI DGRMVEAKKA VPRDDQSITS KNNGSSIGSP
101: GPGRTRKIFV GGLASNVTEV EFRRYFEQFG VITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR AVPKEQSPGP AARSPAGGQN
201: YAMSRVHSFL NGFNQGYNPN PIGGYGMRVD GRYGLLTGAR NGFSSFGPGY GMGMNSESGM NANFGANSSF VNNSNGRQIG SFYNGSSNRL GSPIGYVGLN
301: DDSGSLLSSM SRNVWGNENL NYPNNPTNMS SFAPSGTGGQ MGITSDGINW GGPTPGHGMG NISSLGLANL GRGAGDSFGL PSGSYGRSNA TGTIGEPFSA
401: PPNAYEVNNA DTYGSSSIYG DSTWRFTSSE IDMPPFGNDL GNVDPDIKSN IPASYMGNYT VNNNQTSRGI TS
101: GPGRTRKIFV GGLASNVTEV EFRRYFEQFG VITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR AVPKEQSPGP AARSPAGGQN
201: YAMSRVHSFL NGFNQGYNPN PIGGYGMRVD GRYGLLTGAR NGFSSFGPGY GMGMNSESGM NANFGANSSF VNNSNGRQIG SFYNGSSNRL GSPIGYVGLN
301: DDSGSLLSSM SRNVWGNENL NYPNNPTNMS SFAPSGTGGQ MGITSDGINW GGPTPGHGMG NISSLGLANL GRGAGDSFGL PSGSYGRSNA TGTIGEPFSA
401: PPNAYEVNNA DTYGSSSIYG DSTWRFTSSE IDMPPFGNDL GNVDPDIKSN IPASYMGNYT VNNNQTSRGI TS
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.