Factsheet for Bra019094.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46689	Canola	nucleus	99.78	99.78
CDX92807	Canola	nucleus	94.6	97.33
CDY46690	Canola	nucleus	85.96	92.99
AT4G26650.1	Thale cress	nucleus	83.15	84.62
Bra026413.1-P	Field mustard	nucleus	76.89	84.16
Bra028973.1-P	Field mustard	nucleus	68.9	73.67
KRG98573	Soybean	nucleus	55.08	53.24
KRH14284	Soybean	nucleus	54.86	53.14
VIT_19s0090g01660.t01	Wine grape	nucleus	54.86	53.14
KRH73860	Soybean	nucleus	54.0	52.41
KRH46297	Soybean	nucleus	54.21	52.4
PGSC0003DMT400037271	Potato	nucleus	52.48	51.7
GSMUA_Achr10P...	Banana	nucleus	50.97	51.3
GSMUA_Achr10P...	Banana	nucleus	47.95	50.45
Solyc10g006050.2.1	Tomato	nucleus	46.65	49.88
PGSC0003DMT400076643	Potato	nucleus	50.97	49.79
GSMUA_Achr4P33100_001	Banana	nucleus	46.0	48.19
GSMUA_Achr6P10970_001	Banana	nucleus	51.84	48.0
Os11t0637700-01	Rice	plasma membrane	48.38	47.97
TraesCS4D01G152200.1	Wheat	nucleus	47.95	47.95
HORVU0Hr1G008280.1	Barley	nucleus	47.95	47.95
TraesCS4A01G150600.1	Wheat	nucleus	47.95	47.95
TraesCSU01G068500.1	Wheat	nucleus	47.73	47.73
Solyc12g014600.1.1	Tomato	nucleus	44.92	47.6
Bra001267.1-P	Field mustard	nucleus	47.95	47.13
Bra040031.1-P	Field mustard	nucleus	48.16	45.88
Zm00001d019079_P001	Maize	cytosol	44.28	45.76
Zm00001d007772_P001	Maize	nucleus	44.28	45.66
Os07t0584500-01	Rice	nucleus	46.22	45.34
TraesCS2B01G216600.2	Wheat	cytosol	45.79	45.01
TraesCS2D01G197500.2	Wheat	nucleus	45.57	44.89
EER98147	Sorghum	nucleus	43.63	44.59
EER97452	Sorghum	nucleus	45.36	44.59
Bra029681.1-P	Field mustard	nucleus	48.16	44.51
Bra017475.1-P	Field mustard	nucleus	41.04	44.5
EER96020	Sorghum	nucleus	43.63	44.4
Zm00001d019084_P002	Maize	nucleus	43.2	44.05
Zm00001d006704_P002	Maize	nucleus	45.14	43.18
Bra021062.1-P	Field mustard	nucleus	36.07	42.6
Bra024928.1-P	Field mustard	nucleus	38.23	42.14
Bra022145.1-P	Field mustard	nucleus	39.52	39.78
TraesCS2A01G190400.1	Wheat	plastid	45.36	39.55
Bra021850.1-P	Field mustard	nucleus	31.1	39.24
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	45.36	38.82
Zm00001d019086_P001	Maize	nucleus	44.49	38.72
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.48	38.46
OQU83904	Sorghum	nucleus	37.15	38.22
Bra005496.1-P	Field mustard	nucleus	30.67	37.77
Bra022938.1-P	Field mustard	nucleus	32.18	36.52
Bra010757.1-P	Field mustard	nucleus	29.59	35.86
GSMUA_Achr3P02300_001	Banana	nucleus	49.68	33.87
Bra039380.1-P	Field mustard	nucleus	24.19	30.94
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	22.89	29.12
Bra017802.1-P	Field mustard	nucleus	19.65	22.3
Bra025568.1-P	Field mustard	nucleus	24.62	20.92
Bra024547.1-P	Field mustard	nucleus	10.15	19.67
Bra007096.1-P	Field mustard	nucleus	10.15	18.15
Bra012350.1-P	Field mustard	nucleus	9.72	18.07
Bra012254.1-P	Field mustard	nucleus	9.07	17.43
Bra016445.1-P	Field mustard	nucleus	9.5	17.05
Bra025852.1-P	Field mustard	nucleus	9.5	16.86
Bra038113.1-P	Field mustard	nucleus	14.9	16.67
Bra039664.1-P	Field mustard	nucleus	14.9	16.63
Bra004508.1-P	Field mustard	nucleus	11.02	16.35
Bra010203.1-P	Field mustard	nucleus	10.37	15.74
Bra040485.1-P	Field mustard	nucleus	10.8	15.34
Bra007277.1-P	Field mustard	nucleus	14.69	15.14
Bra014667.1-P	Field mustard	nucleus	9.5	14.43
Bra031230.1-P	Field mustard	nucleus	9.5	14.33
Bra003651.1-P	Field mustard	nucleus	8.21	14.02
Bra016954.1-P	Field mustard	nucleus	13.17	13.86
Bra031385.1-P	Field mustard	nucleus	8.64	13.79
Bra012321.1-P	Field mustard	nucleus	8.42	13.49
Bra029612.1-P	Field mustard	nucleus	8.21	13.24
Bra030265.1-P	Field mustard	nucleus	9.5	12.02
Bra001228.1-P	Field mustard	cytosol	9.07	11.6
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	7.56	11.22

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra019094	EnsemblPlants:Bra019094.1	EnsemblPlants:Bra019094.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DRF1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002541252	SEG:seg

Description

AT4G26650 (E=6e-199) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:+:26357241..26358764

Molecular Weight (calculated)

50252.6 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.635

Length

463 amino acids

Sequence
(BLAST)

001: MESVSDLGKL FIGGISWDTD EERLREYFSK YGDLVESVIM RDRTTGRARG FGFIVFADPS VAERVILEKH IIDGRTVEAK KAVPRDDQQV LKRHASPMHL
101: ISSSPSQHGG GSNRTKKIFV GGLPSSITEA EFKNYFDQFG TIADVVVMYD HNTQRPRGFG FITFDSEESV DMVLHKTFHE LNGKMVEVKR AVPKEPSSSS
201: ALPLAANRSP LLGGYGGNNY GVVVPNRPSG NNSYFNSFAP GYNSNNIGRF SPIGSGRNAF SSNFGLGLNQ ELSLNSSFDG NATLGYNNRI PGNQYFNNAS
301: PNRYNNSPIG FNRGDSAYNP SNRDLLWGNR TDSSGPGWNL GVSVGNNRGN WGLSDANGYG RSFGTSSGLS ALPFSGSNNN NNNTNGFDGS IGEMYRGNSV
401: YSDSTWQQAM PHQSANELDG LSRSYGFGFD NVASDPSGNA SEGYPRSYSV GGNRGWYTHS SAS

Best Arabidopsis Sequence Match ( AT4G26650.1 )
(BLAST)

001: MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA

Arabidopsis Description

AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.