Factsheet for Bra021062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50131	Canola	nucleus	92.09	94.5
CDY58169	Canola	cytosol, nucleus, plasma membrane	98.72	94.16
Bra024928.1-P	Field mustard	nucleus	62.5	58.33
Bra017475.1-P	Field mustard	nucleus	63.52	58.31
AT5G47620.4	Thale cress	cytoskeleton, cytosol, nucleus	63.78	55.19
Bra022145.1-P	Field mustard	nucleus	63.27	53.91
CDX75170	Canola	extracellular	19.39	46.63
Os11t0637700-01	Rice	plasma membrane	48.21	40.47
GSMUA_Achr4P33100_001	Banana	nucleus	45.15	40.05
HORVU0Hr1G008280.1	Barley	nucleus	47.19	39.96
TraesCSU01G068500.1	Wheat	nucleus	47.19	39.96
TraesCS4D01G152200.1	Wheat	nucleus	47.19	39.96
TraesCS4A01G150600.1	Wheat	nucleus	47.19	39.96
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.91	39.74
Os07t0584500-01	Rice	nucleus	47.45	39.41
GSMUA_Achr10P...	Banana	nucleus	44.13	39.32
EER96020	Sorghum	nucleus	44.9	38.68
EER98147	Sorghum	nucleus	44.64	38.63
Zm00001d019079_P001	Maize	cytosol	44.13	38.62
Zm00001d007772_P001	Maize	nucleus	44.13	38.53
GSMUA_Achr10P...	Banana	nucleus	45.15	38.48
EER97452	Sorghum	nucleus	45.92	38.22
TraesCS2B01G216600.2	Wheat	cytosol	45.92	38.22
TraesCS2D01G197500.2	Wheat	nucleus	45.66	38.09
Bra001267.1-P	Field mustard	nucleus	45.66	38.0
Zm00001d019084_P002	Maize	nucleus	43.37	37.44
Bra028973.1-P	Field mustard	nucleus	41.33	37.41
Bra040031.1-P	Field mustard	nucleus	45.92	37.04
GSMUA_Achr6P10970_001	Banana	nucleus	47.19	37.0
Zm00001d006704_P002	Maize	nucleus	45.66	36.98
Bra026413.1-P	Field mustard	nucleus	39.29	36.41
Bra029681.1-P	Field mustard	nucleus	46.43	36.33
Bra019094.1-P	Field mustard	nucleus	42.6	36.07
OQU83904	Sorghum	nucleus	38.78	33.78
TraesCS2A01G190400.1	Wheat	plastid	45.66	33.71
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	45.41	32.9
Zm00001d019086_P001	Maize	nucleus	44.64	32.89
Bra010757.1-P	Field mustard	nucleus	31.89	32.72
Bra005496.1-P	Field mustard	nucleus	31.12	32.45
Bra021850.1-P	Field mustard	nucleus	29.85	31.88
Bra022938.1-P	Field mustard	nucleus	31.38	30.15
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	27.81	29.95
Bra039380.1-P	Field mustard	nucleus	26.53	28.73
GSMUA_Achr3P02300_001	Banana	nucleus	44.39	25.63
Bra025568.1-P	Field mustard	nucleus	28.06	20.18
Bra024547.1-P	Field mustard	nucleus	12.24	20.08
Bra012254.1-P	Field mustard	nucleus	12.24	19.92
Bra012350.1-P	Field mustard	nucleus	12.5	19.68
Bra025852.1-P	Field mustard	nucleus	12.76	19.16
Bra017802.1-P	Field mustard	nucleus	19.64	18.87
Bra016445.1-P	Field mustard	nucleus	11.99	18.22
Bra007096.1-P	Field mustard	nucleus	11.99	18.15
Bra038113.1-P	Field mustard	nucleus	17.6	16.67
Bra039664.1-P	Field mustard	nucleus	17.6	16.63
Bra003651.1-P	Field mustard	nucleus	11.22	16.24
Bra010203.1-P	Field mustard	nucleus	12.24	15.74
Bra004508.1-P	Field mustard	nucleus	12.5	15.71
Bra001228.1-P	Field mustard	cytosol	14.03	15.19
Bra040485.1-P	Field mustard	nucleus	12.5	15.03
Bra007277.1-P	Field mustard	nucleus	16.84	14.7
Bra031230.1-P	Field mustard	nucleus	11.48	14.66
Bra031385.1-P	Field mustard	nucleus	10.71	14.48
Bra012321.1-P	Field mustard	nucleus	10.46	14.19
Bra029612.1-P	Field mustard	nucleus	10.2	13.94
Bra016954.1-P	Field mustard	nucleus	15.56	13.86
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	10.2	12.82
Bra014667.1-P	Field mustard	nucleus	9.95	12.79
Bra030265.1-P	Field mustard	nucleus	10.97	11.75

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra021062	EnsemblPlants:Bra021062.1	EnsemblPlants:Bra021062.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DX16	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002546EE3	SEG:seg

Description

AT5G47620 (E=5e-110) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA08:+:10125626..10127119

Molecular Weight (calculated)

42791.4 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.398

Length

392 amino acids

Sequence
(BLAST)

001: MPCVSESSFD RMELESSCKL FIGGISWETT EDSLLQYFQT FGEVLEALVI KDRLTGRARG FGFIVFKDSS VAQRVLLQKH MIDGKSVEAK KAVPRDDHIS
101: VNKSNSSLQG SPGPAHSKKI FVGGLASSVT EAEFKKYFAQ FGTIIDLVVM YDHKTQRPRG FGFVTYDSEE AVDKVLQRKF HELDGKMVEV KVAVPKETSP
201: IPNMNISSLN NFGSSRMSLL LNDYTQGFNL SPTSAKPEVR YSPALSNQRS FSPFGHGFEI DLDFIERNHN QSNVSRRLFS PGYNASLSRY GGQWNGSVNR
301: NQLWGNNGGL SYMSNAELSG GFNGNYGVGS IGEKWGTVGE GRINYGISNG MGLGSRGGGG AHMSSSGWGM SSEGGGMRGC GYMNNTEELL LA

Best Arabidopsis Sequence Match ( AT5G47620.5 )
(BLAST)

001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.