Factsheet for Bra024547.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69197	Canola	nucleus	91.63	97.33
Bra012350.1-P	Field mustard	nucleus	87.87	84.34
KRH75298	Soybean	cytosol, nucleus	30.54	73.74
KRH13261	Soybean	cytosol	34.73	66.94
AT1G22910.3	Thale cress	nucleus	84.1	57.93
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	52.72	48.28
VIT_18s0089g00920.t01	Wine grape	nucleus	53.97	47.96
PGSC0003DMT400008944	Potato	nucleus	52.72	47.73
KRH23771	Soybean	nucleus	53.56	47.06
KRH40033	Soybean	nucleus	53.56	47.06
EES01849	Sorghum	nucleus	49.37	45.04
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	48.95	43.33
GSMUA_Achr8P08440_001	Banana	nucleus	46.44	42.86
GSMUA_Achr10P...	Banana	nucleus	48.54	42.8
GSMUA_Achr3P21850_001	Banana	nucleus	46.86	42.75
KRH62942	Soybean	mitochondrion	34.73	40.69
Zm00001d042641_P001	Maize	nucleus	49.37	40.0
Os01t0876800-00	Rice	nucleus	49.37	39.33
TraesCS3B01G419200.1	Wheat	nucleus	48.54	39.19
TraesCS3D01G380100.1	Wheat	nucleus	48.54	39.19
TraesCS3A01G389600.1	Wheat	nucleus	48.54	39.06
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	12.13	37.18
Bra012254.1-P	Field mustard	nucleus	37.24	36.93
Bra016445.1-P	Field mustard	nucleus	39.75	36.82
Bra025852.1-P	Field mustard	nucleus	39.75	36.4
TraesCS3B01G562300.3	Wheat	mitochondrion	45.19	34.62
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	44.77	34.29
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	44.77	34.19
TraesCS3D01G505900.1	Wheat	mitochondrion	45.19	34.18
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	48.54	34.12
Bra010203.1-P	Field mustard	nucleus	43.1	33.77
Os01t0958500-01	Rice	nucleus	41.42	31.94
Bra004508.1-P	Field mustard	nucleus	40.17	30.77
Bra007096.1-P	Field mustard	nucleus	33.05	30.5
EES02078	Sorghum	nucleus	42.26	29.88
Bra040485.1-P	Field mustard	nucleus	40.17	29.45
Zm00001d042042_P001	Maize	nucleus	40.59	28.53
Bra012321.1-P	Field mustard	nucleus	33.47	27.68
Bra003651.1-P	Field mustard	nucleus	31.38	27.68
Bra031385.1-P	Field mustard	nucleus	33.05	27.24
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	28.45	21.79
Bra029612.1-P	Field mustard	nucleus	20.5	17.07
GSMUA_Achr6P24180_001	Banana	cytosol	45.19	16.19
Bra031230.1-P	Field mustard	nucleus	18.41	14.33
Bra001228.1-P	Field mustard	cytosol	20.92	13.81
Bra021850.1-P	Field mustard	nucleus	20.08	13.08
Bra017475.1-P	Field mustard	nucleus	23.01	12.88
Bra010757.1-P	Field mustard	nucleus	20.5	12.83
Bra005496.1-P	Field mustard	nucleus	20.08	12.77
Bra038113.1-P	Field mustard	nucleus	21.76	12.56
Bra024928.1-P	Field mustard	nucleus	21.76	12.38
Bra039664.1-P	Field mustard	nucleus	21.34	12.29
Bra021062.1-P	Field mustard	nucleus	20.08	12.24
Bra039380.1-P	Field mustard	nucleus	18.41	12.15
Bra022938.1-P	Field mustard	nucleus	20.5	12.01
Bra022145.1-P	Field mustard	nucleus	21.76	11.3
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	17.15	11.26
Bra016954.1-P	Field mustard	nucleus	20.5	11.14
Bra028973.1-P	Field mustard	nucleus	19.67	10.85
Bra007277.1-P	Field mustard	nucleus	20.08	10.69
Bra014667.1-P	Field mustard	nucleus	13.39	10.49
Bra001267.1-P	Field mustard	nucleus	20.5	10.4
Bra030265.1-P	Field mustard	nucleus	15.9	10.38
Bra017802.1-P	Field mustard	nucleus	17.57	10.29
Bra019094.1-P	Field mustard	nucleus	19.67	10.15
Bra040031.1-P	Field mustard	nucleus	20.5	10.08
Bra029681.1-P	Field mustard	nucleus	20.5	9.78
Bra026413.1-P	Field mustard	nucleus	17.15	9.69
Bra025568.1-P	Field mustard	nucleus	20.08	8.81

Protein Annotations

EnsemblPlants:Bra024547.1	EnsemblPlants:Bra024547.1-P	EnsemblPlantsGene:Bra024547	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44374	PANTHER:PTHR44374:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002542A76	UniProt:M4E6Z2	MapMan:35.1	:

Description

AT1G22910 (E=2e-104) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:-:24473824..24475506

Molecular Weight (calculated)

25657.1 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.335

Length

239 amino acids

Sequence
(BLAST)

001: MADTTYTKVF VGGLAWETDK DTMKKHFEQF GEILEAVVIT DKASGRSKGY GFVTFKEAEA ARRACVDGTP VIDGRRANCN LASLGLQRSK PSTPNHGGGR
101: INNMRVMMSN TMQTGFGPPP TFTHYPHLPL NLFGYSPYSS DFSPFPTNLY GVYGCNSAGQ YGLYGNGNGV SGGLTAAAAS AAPFYPCGGG QGGVQFSQPQ
201: PFYHHFSAYD NSHHYSPATI SLQQGVTGFP LQPPLIPYL

Best Arabidopsis Sequence Match ( AT1G22910.1 )
(BLAST)

001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.