Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG21997 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | KXG21997 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042042_P001 | Maize | nucleus | 83.14 | 82.65 |
| Os01t0958500-01 | Rice | nucleus | 67.75 | 73.87 |
| KRH75298 | Soybean | cytosol, nucleus | 20.41 | 69.7 |
| KRH13261 | Soybean | cytosol | 23.96 | 65.32 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 56.51 | 61.22 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 56.8 | 60.76 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 56.21 | 60.7 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 55.92 | 60.58 |
| KRH40033 | Soybean | nucleus | 39.94 | 49.63 |
| KRH23771 | Soybean | nucleus | 39.65 | 49.26 |
| EES01849 | Sorghum | nucleus | 38.17 | 49.24 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 38.76 | 48.7 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 37.57 | 48.66 |
| PGSC0003DMT400008944 | Potato | nucleus | 37.87 | 48.48 |
| GSMUA_Achr10P... | Banana | nucleus | 38.17 | 47.6 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 36.98 | 46.3 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 35.21 | 45.95 |
| CDX73279 | Canola | cytosol | 32.54 | 45.45 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 35.21 | 45.42 |
| AT1G33470.1 | Thale cress | cytosol | 32.84 | 45.31 |
| CDY69197 | Canola | nucleus | 28.4 | 42.67 |
| Bra024547.1-P | Field mustard | nucleus | 29.88 | 42.26 |
| CDY04769 | Canola | nucleus | 29.59 | 42.19 |
| Bra012350.1-P | Field mustard | nucleus | 30.77 | 41.77 |
| KRH62942 | Soybean | mitochondrion | 25.15 | 41.67 |
| CDY25759 | Canola | nucleus | 30.47 | 41.37 |
| EER90058 | Sorghum | plastid | 31.95 | 37.76 |
| Bra010203.1-P | Field mustard | nucleus | 32.84 | 36.39 |
| OQU85520 | Sorghum | nucleus, plastid | 29.88 | 34.24 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 29.88 | 32.58 |
| CDY67263 | Canola | nucleus | 30.77 | 31.71 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.1 | 30.38 |
| AT1G22910.3 | Thale cress | nucleus | 31.07 | 30.26 |
| KXG30724 | Sorghum | plastid | 27.22 | 29.68 |
| OQU76075 | Sorghum | plastid | 29.59 | 28.33 |
| CDY13339 | Canola | mitochondrion | 13.31 | 26.79 |
| CDY21399 | Canola | mitochondrion | 9.47 | 22.07 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 36.09 | 18.29 |
| EES03272 | Sorghum | nucleus | 19.53 | 14.83 |
| EER88542 | Sorghum | nucleus | 18.05 | 14.73 |
| EES01076 | Sorghum | nucleus | 15.09 | 14.61 |
| EES06526 | Sorghum | nucleus | 16.86 | 14.58 |
| KXG34100 | Sorghum | cytosol | 15.38 | 14.44 |
| EER98147 | Sorghum | nucleus | 17.16 | 12.8 |
| EER96020 | Sorghum | nucleus | 17.16 | 12.75 |
| KXG38359 | Sorghum | nucleus | 16.27 | 12.14 |
| EER97452 | Sorghum | nucleus | 16.86 | 12.1 |
| KXG30578 | Sorghum | nucleus | 13.02 | 11.83 |
| KXG37469 | Sorghum | cytosol | 10.06 | 11.22 |
| EER95824 | Sorghum | cytosol | 12.43 | 11.02 |
| EES12939 | Sorghum | nucleus | 16.57 | 10.63 |
| EES02736 | Sorghum | plastid | 14.2 | 10.34 |
| OQU81002 | Sorghum | nucleus | 9.76 | 9.85 |
| OQU83904 | Sorghum | nucleus | 13.02 | 9.78 |
| EES10068 | Sorghum | nucleus | 10.95 | 8.58 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:C5XIJ7 | EnsemblPlants:EES02078 | ProteinID:EES02078 | ProteinID:EES02078.2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3003G432900 | SUPFAM:SSF54928 | unigene:Sbi.7407 | UniParc:UPI00081AE9E5 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:73498110..73506624
Molecular Weight (calculated)
34637.9 Da
IEP (calculated)
8.465
GRAVY (calculated)
-0.029
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQAMSGGGG GGGGGGAGQF GDTTFTKVFV GGLAWETHKE GMRAYFQQFG DILEAVVITD KNTGRSKGYG FVTFREPEAA LRACIDPYPV IDGRRANCNL
101: AYLGVNKSKT ALLPSYLQPY AHVYGGGGGS NNMRATMKSF QTAGAGGASL MSFVPAADHG IQQGIPTYSV YAGYSPYISD YGYPLSYYQP YAGLQQGAQL
201: QQYAILGGGG ATATAPAGLT MAPEAANPSA LYPYFQYAPA AAMAAGGYGM VQYPQLYQYA AAAAVGGTTA ATTLAAVAGG LQQYGGAVAF TPNSIAQAGM
301: TMSLTSPTLA APTAQQYYSR LVPSPLAAAA TDQKPSLA
101: AYLGVNKSKT ALLPSYLQPY AHVYGGGGGS NNMRATMKSF QTAGAGGASL MSFVPAADHG IQQGIPTYSV YAGYSPYISD YGYPLSYYQP YAGLQQGAQL
201: QQYAILGGGG ATATAPAGLT MAPEAANPSA LYPYFQYAPA AAMAAGGYGM VQYPQLYQYA AAAAVGGTTA ATTLAAVAGG LQQYGGAVAF TPNSIAQAGM
301: TMSLTSPTLA APTAQQYYSR LVPSPLAAAA TDQKPSLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.