CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11709
EES14795
EES15089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	EES14795	AT3G21215.1	21798944
AT4G14300.1	EES11709	AT2G16950.1	14756317
AT4G14300.1	EES15089	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032739_P001	Maize	nucleus	93.38	95.49
Zm00001d014058_P002	Maize	plastid	93.82	88.17
TraesCS1B01G168200.1	Wheat	nucleus	81.46	81.64
TraesCS1D01G147600.1	Wheat	nucleus	81.46	81.28
TraesCS1A01G150600.1	Wheat	nucleus	81.46	81.28
HORVU1Hr1G039790.1	Barley	nucleus	81.9	72.75
GSMUA_Achr5P17700_001	Banana	cytosol	14.57	70.97
GSMUA_Achr10P...	Banana	nucleus	37.53	68.55
VIT_07s0005g03980.t01	Wine grape	nucleus	57.4	59.91
GSMUA_Achr1P10970_001	Banana	nucleus	56.29	58.49
CDY12068	Canola	nucleus	45.7	57.82
AT2G33410.1	Thale cress	nucleus	50.99	57.18
AT4G14300.1	Thale cress	nucleus	51.88	57.18
Bra021850.1-P	Field mustard	nucleus	46.14	56.95
Bra005496.1-P	Field mustard	nucleus	46.8	56.38
CDY17173	Canola	nucleus	46.8	56.23
CDY67299	Canola	nucleus	47.24	56.17
CDY23739	Canola	nucleus	47.24	55.87
CDX79527	Canola	nucleus	49.89	55.66
CDX90262	Canola	nucleus	46.8	55.5
Bra022938.1-P	Field mustard	nucleus	49.89	55.39
Bra010757.1-P	Field mustard	nucleus	46.58	55.24
CDY37724	Canola	nucleus	39.29	55.11
KRH07772	Soybean	cytosol	11.92	55.1
KRH34534	Soybean	nucleus	57.17	54.99
CDX84689	Canola	nucleus	49.45	54.9
KRG92276	Soybean	endoplasmic reticulum	56.29	53.57
Solyc09g072790.2.1	Tomato	nucleus	36.87	42.39
PGSC0003DMT400009762	Potato	nucleus	37.09	42.32
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	6.62	37.97
EER98147	Sorghum	nucleus	37.75	37.75
EER96020	Sorghum	nucleus	37.53	37.36
EES06526	Sorghum	nucleus	31.79	36.83
EER97452	Sorghum	nucleus	38.19	36.73
EES01076	Sorghum	nucleus	27.59	35.82
EER88542	Sorghum	nucleus	30.91	33.82
OQU83904	Sorghum	nucleus	32.23	32.44
KXG37469	Sorghum	cytosol	20.53	30.69
EER95824	Sorghum	cytosol	25.61	30.45
KXG34100	Sorghum	cytosol	20.75	26.11
OQU81002	Sorghum	nucleus	18.32	24.78
EES01849	Sorghum	nucleus	13.47	23.28
EER90058	Sorghum	plastid	12.36	19.58
EES03272	Sorghum	nucleus	18.76	19.1
OQU85520	Sorghum	nucleus, plastid	11.26	17.29
KXG30724	Sorghum	plastid	11.48	16.77
EES02078	Sorghum	nucleus	12.14	16.27
EER95048	Sorghum	cytosol, nucleus, plastid	10.82	15.81
OQU76075	Sorghum	plastid	11.48	14.73
EES02736	Sorghum	plastid	14.79	14.44
EES12939	Sorghum	nucleus	16.56	14.23
KXG30578	Sorghum	nucleus	10.6	12.9
EES10068	Sorghum	nucleus	9.93	10.44

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1B6QKD1	InterPro:DAZAP1_RRM2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG38359	ProteinID:KXG38359
ProteinID:KXG38359.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G222900	SUPFAM:SSF54928	UniParc:UPI0001C80ADE	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:21314169..21320655

Molecular Weight (calculated)

44871.2 Da

IEP (calculated)

6.898

GRAVY (calculated)

-0.669

Length

453 amino acids

Sequence
(BLAST)

001: MESDQGKLFI GGISWETTEE KLSEHFSAYG EVTQAAVMRD KITGRPRGFG FVVFADPAVV DRALQDPHTL DGRTVDVKRA LSREEQQASK AANPSGGRNT
101: GGAGGGGGGG AGDASGARTK KIFVGGLPST LTEDGFRQYF QTFGSVTDVV VMYDQNTQRP RGFGFITFDS EDAVDRVLHK TFHDLGGKLV EVKRALPREA
201: NPGGSSGGRS GGSGGYQSNN GHNTSSGSYD GRSDGGRYGQ AQQGSGGYPG YGAGGYGAGA AGYGYGANPA VGYGNYGAGG YGGVPAAYGG HYGNPGAAGS
301: GYQGGPPGSN RGPWGSQAPS AYGTGGYGSS AGYSAWNNSS GGGNAPSSQA PGGPAGYGSQ GYGYGGYGGD PSYASHGGYG AYGGRSDGAG NPATGGASGY
401: SAGYGSGGAN SGYSSAWSDP SQGGGFGGSV NGGAEGQSNY GTGYGSVQPR VAQ

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.