Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 93.0 | 93.22 |
| Zm00001d046190_P001 | Maize | extracellular | 91.79 | 90.91 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 61.84 | 87.67 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 76.81 | 79.3 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 71.98 | 78.84 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 75.12 | 77.94 |
| EES06526 | Sorghum | nucleus | 69.32 | 73.4 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 75.85 | 70.72 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 53.14 | 65.28 |
| GSMUA_Achr10P... | Banana | nucleus | 51.93 | 64.56 |
| Solyc03g121710.2.1 | Tomato | nucleus | 35.27 | 54.28 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 44.69 | 52.41 |
| PGSC0003DMT400006638 | Potato | nucleus | 45.89 | 49.22 |
| EES01076 | Sorghum | nucleus | 40.58 | 48.14 |
| CDY26229 | Canola | nucleus | 41.06 | 45.82 |
| AT1G17640.1 | Thale cress | nucleus | 40.82 | 45.8 |
| CDY48318 | Canola | nucleus | 41.06 | 45.7 |
| KRH23293 | Soybean | nucleus | 38.65 | 45.33 |
| Solyc06g062740.1.1 | Tomato | cytosol | 19.57 | 41.12 |
| PGSC0003DMT400012372 | Potato | nucleus | 28.26 | 39.39 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.25 | 37.97 |
| OQU81002 | Sorghum | nucleus | 28.02 | 34.63 |
| PGSC0003DMT400012369 | Potato | nucleus | 35.99 | 34.1 |
| Solyc06g062730.1.1 | Tomato | nucleus | 29.71 | 33.52 |
| KXG38359 | Sorghum | nucleus | 33.82 | 30.91 |
| KXG34100 | Sorghum | cytosol | 24.4 | 28.06 |
| EER98147 | Sorghum | nucleus | 28.5 | 26.05 |
| EER96020 | Sorghum | nucleus | 28.5 | 25.93 |
| EER95824 | Sorghum | cytosol | 22.95 | 24.93 |
| KXG37469 | Sorghum | cytosol | 17.63 | 24.09 |
| EES01849 | Sorghum | nucleus | 15.22 | 24.05 |
| EER97452 | Sorghum | nucleus | 27.29 | 23.99 |
| OQU83904 | Sorghum | nucleus | 25.36 | 23.33 |
| EER90058 | Sorghum | plastid | 14.01 | 20.28 |
| EES03272 | Sorghum | nucleus | 21.01 | 19.55 |
| EES02736 | Sorghum | plastid | 20.53 | 18.32 |
| OQU85520 | Sorghum | nucleus, plastid | 13.04 | 18.31 |
| EES02078 | Sorghum | nucleus | 14.73 | 18.05 |
| KXG30724 | Sorghum | plastid | 12.32 | 16.45 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 12.32 | 16.45 |
| KXG30578 | Sorghum | nucleus | 14.01 | 15.59 |
| OQU76075 | Sorghum | plastid | 12.32 | 14.45 |
| EES12939 | Sorghum | nucleus | 15.46 | 12.14 |
| EES10068 | Sorghum | nucleus | 9.9 | 9.51 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8076737 | UniProt:C5Z4R7 | ncoils:Coil | EnsemblPlants:EER88542 |
| ProteinID:EER88542 | ProteinID:EER88542.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | InterPro:Hrp1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3010G171100 |
| SUPFAM:SSF54928 | unigene:Sbi.15270 | UniParc:UPI0001A8929E | RefSeq:XP_002437175.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:+:50269394..50277649
Molecular Weight (calculated)
42607.0 Da
IEP (calculated)
4.505
GRAVY (calculated)
-0.771
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYGEENQN AMNGYEEEEE EEEVEEVEEV YEEEEEEGDG DGEGEGEADE GAAAAEAAAM AAETRSVVGD RGLAEAAGNV DAGGEDGRDA DSGGGDSSGK
101: IFVGGVAWET TEETFTKHFQ KYGAITDSVI MKDKHTRMPR GFGFVTFSDP SVLDRVLEDA HVIDGRTVEV KRTVPKEEMS SKDGPKTKKI FVGGIPSSLT
201: EDKLKEHFSS YGKVVEHQIM LDHSTGRSRG FGFVTFESED AVERVMSEGR MHDLGGKQVE IKKAEPKKPG GGDSSSNGRH SRGGGHRDSY RGSGGGSGVS
301: GNSSGGGYGY GGGYRSTAAA YYGSTAYGAY GRGYGYGGTA AGYGSGYGSA YGGSMYGGPY GAYGAYGGAY GGGAYGAPGG YGAGGYDSYG GAGGMGGGGS
401: AGGRGSSRYH PYGK
101: IFVGGVAWET TEETFTKHFQ KYGAITDSVI MKDKHTRMPR GFGFVTFSDP SVLDRVLEDA HVIDGRTVEV KRTVPKEEMS SKDGPKTKKI FVGGIPSSLT
201: EDKLKEHFSS YGKVVEHQIM LDHSTGRSRG FGFVTFESED AVERVMSEGR MHDLGGKQVE IKKAEPKKPG GGDSSSNGRH SRGGGHRDSY RGSGGGSGVS
301: GNSSGGGYGY GGGYRSTAAA YYGSTAYGAY GRGYGYGGTA AGYGSGYGSA YGGSMYGGPY GAYGAYGGAY GGGAYGAPGG YGAGGYDSYG GAGGMGGGGS
401: AGGRGSSRYH PYGK
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.