CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018730_P001	Maize	nucleus	84.25	85.83
Zm00001d007839_P001	Maize	cytosol	81.1	83.51
TraesCS2D01G256500.1	Wheat	nucleus	67.45	68.72
TraesCS2A01G267500.1	Wheat	nucleus	66.93	68.55
HORVU2Hr1G061380.2	Barley	nucleus	66.67	68.28
Os07t0124600-01	Rice	nucleus	66.4	67.11
KXG37469	Sorghum	cytosol	31.76	39.93
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	7.87	37.97
GSMUA_Achr4P32300_001	Banana	nucleus	11.29	29.25
GSMUA_Achr4P28100_001	Banana	nucleus	31.23	26.92
KXG38359	Sorghum	nucleus	30.45	25.61
GSMUA_Achr7P00730_001	Banana	cytosol	12.07	25.41
EES06526	Sorghum	nucleus	25.46	24.81
EES01076	Sorghum	nucleus	22.05	24.07
EER98147	Sorghum	nucleus	28.35	23.84
EER96020	Sorghum	nucleus	28.35	23.74
EER97452	Sorghum	nucleus	29.13	23.57
KXG34100	Sorghum	cytosol	21.78	23.06
EER88542	Sorghum	nucleus	24.93	22.95
OQU83904	Sorghum	nucleus	25.46	21.56
OQU81002	Sorghum	nucleus	17.59	20.0
EES01849	Sorghum	nucleus	12.86	18.7
KXG30724	Sorghum	plastid	13.39	16.45
EER90058	Sorghum	plastid	11.81	15.73
OQU85520	Sorghum	nucleus, plastid	11.81	15.25
EES03272	Sorghum	nucleus	16.8	14.38
EES02078	Sorghum	nucleus	11.02	12.43
OQU76075	Sorghum	plastid	11.29	12.18
KXG30578	Sorghum	nucleus	11.81	12.1
EER95048	Sorghum	cytosol, nucleus, plastid	9.71	11.94
EES12939	Sorghum	nucleus	16.27	11.76
EES10068	Sorghum	nucleus	13.12	11.6
EES02736	Sorghum	plastid	13.39	10.99
CDX69277	Canola	mitochondrion	4.99	10.22

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:C5X8R1	EnsemblPlants:EER95824	ProteinID:EER95824	ProteinID:EER95824.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3002G022400	SUPFAM:SSF54928	unigene:Sbi.6137	UniParc:UPI0003C71568	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:2035892..2040594

Molecular Weight (calculated)

41215.9 Da

IEP (calculated)

6.897

GRAVY (calculated)

-0.638

Length

381 amino acids

Sequence
(BLAST)

001: MAASAGPAAA AVGEEEAGES RKLFVGGIPA GAQEPELRAH FARFGEVRSV IVMRDRETGH GRGFGFVEFE DEAAAAAALG DGDAPRHFLC GRMVDVKRAR
101: TRAPRNQGEQ HSQPQQAEQG RGQGNQDNQS PAAGNGTADS DNNVSYDSKK VFIGGLRDNI TEEEFRSYFE TFGTVTDVVV IYDSATSRSR GFGFVTFDSE
201: EAVGKVMRQS FHNLNGTKVE AKIAIPKDEA YYRNRGRGAR PFGGRGPAGY EGSMYQPYNA RYGPYNGYMP QPVPAQPYFP APYFAVGAYP YGSGYPSQGV
301: MTNVPGMMSR RIPPAYGTYP QMYPGFNLLY RAGYGGAATS FQHGINGGSD NKKDQTSVDM QQVDNTSSVA TMLEHMKLGS Q

Best Arabidopsis Sequence Match ( AT4G14300.1 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.