Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23777608
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G267500.1 | Wheat | nucleus | 71.09 | 72.04 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 71.09 | 72.04 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 71.35 | 71.93 |
| EER95824 | Sorghum | cytosol | 67.11 | 66.4 |
| Zm00001d018730_P001 | Maize | nucleus | 63.66 | 64.17 |
| Zm00001d007839_P001 | Maize | cytosol | 61.54 | 62.7 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 22.02 | 28.42 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 10.61 | 27.21 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 30.77 | 26.24 |
| Os08t0320100-01 | Rice | nucleus | 23.61 | 25.43 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 11.94 | 24.86 |
| Os02t0221500-01 | Rice | nucleus | 24.67 | 23.43 |
| Os07t0584500-01 | Rice | nucleus | 29.18 | 23.31 |
| Os11t0637700-01 | Rice | plasma membrane | 28.38 | 22.91 |
| Os01t0945800-01 | Rice | nucleus | 20.69 | 21.49 |
| Os05t0376000-00 | Rice | cytosol | 11.67 | 21.05 |
| Os02t0755400-01 | Rice | plastid | 8.75 | 18.75 |
| Os08t0492100-02 | Rice | nucleus | 18.83 | 16.28 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 11.67 | 16.0 |
| Os01t0876800-00 | Rice | nucleus | 12.73 | 16.0 |
| Os01t0958500-01 | Rice | nucleus | 12.47 | 15.16 |
| Os01t0614500-01 | Rice | nucleus | 17.24 | 14.54 |
| Os02t0714000-01 | Rice | nucleus, plastid | 10.88 | 14.29 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 10.88 | 13.23 |
| Os06t0220600-01 | Rice | plastid | 11.94 | 13.12 |
| Os02t0602600-00 | Rice | nucleus | 12.2 | 11.92 |
| Os04t0636900-02 | Rice | nucleus | 15.65 | 11.46 |
| Os01t0265800-01 | Rice | nucleus | 13.26 | 10.2 |
| CDX69277 | Canola | mitochondrion | 4.51 | 9.14 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4342307 | ProteinID:BAC56813.1 | ProteinID:BAF20719.1 | ProteinID:BAS99887.1 |
| ProteinID:EAZ38557.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os07g0124600 | EnsemblPlants:Os07t0124600-01 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | UniProt:Q84Z04 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000046D4 | RefSeq:XP_015647993.1 | RefSeq:XP_015647994.1 | SEG:seg | : | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0124600-01)
Coordinates
chr7:+:1281407..1285040
Molecular Weight (calculated)
41008.6 Da
IEP (calculated)
7.216
GRAVY (calculated)
-0.646
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAGAA AGGGFVGERR KLFVGGIPTS AQEAELRGHF GQYGAVRSVI VMRDKETGHG RGFGFVEFEE EEDAARALGD GEHPRHLICG RVVDVKRARA
101: RPQRNHDDQS SQHQHFGQGQ DQGHQPAPVS GTEDGGDGMN YASKKVFIGG LRDNITEEEF KTYFESFGTV TDVVVIYDSM TNRSRGFGFV TFDSEEAVRK
201: VIEHSFHDLK GTRVEAKIAI PKDASYYRNG RGRGSRNFGG RGHAGFDGPS YQPYNDRYGF YNSYNMPQPV PPHPYYPGVY YGMGGGYPYA NAYSNMGAPA
301: NIPPGMMTRR PVYGAYPPMF PGYGVIYRGY VGAAPSIQHD SNGGSDSKKD QTSVDVQEVD SAASVATKLE FMKLGSQ
101: RPQRNHDDQS SQHQHFGQGQ DQGHQPAPVS GTEDGGDGMN YASKKVFIGG LRDNITEEEF KTYFESFGTV TDVVVIYDSM TNRSRGFGFV TFDSEEAVRK
201: VIEHSFHDLK GTRVEAKIAI PKDASYYRNG RGRGSRNFGG RGHAGFDGPS YQPYNDRYGF YNSYNMPQPV PPHPYYPGVY YGMGGGYPYA NAYSNMGAPA
301: NIPPGMMTRR PVYGAYPPMF PGYGVIYRGY VGAAPSIQHD SNGGSDSKKD QTSVDVQEVD SAASVATKLE FMKLGSQ
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.