Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
18022940
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34100 | Sorghum | cytosol | 90.63 | 91.39 |
| Zm00001d011885_P008 | Maize | cytosol | 89.81 | 90.56 |
| Os05t0376000-00 | Rice | cytosol | 44.08 | 76.56 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 73.83 | 74.65 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 66.94 | 73.86 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 70.52 | 71.31 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 72.73 | 70.78 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 72.45 | 70.51 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 71.63 | 69.71 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 70.52 | 69.0 |
| Zm00001d042133_P003 | Maize | cytosol | 74.93 | 68.34 |
| KRH77004 | Soybean | nucleus | 67.77 | 67.96 |
| PGSC0003DMT400010280 | Potato | cytosol | 69.15 | 67.66 |
| KRH28467 | Soybean | cytosol | 67.77 | 67.4 |
| Solyc02g090910.2.1 | Tomato | nucleus | 69.15 | 66.76 |
| CDY42724 | Canola | cytosol | 66.67 | 63.85 |
| AT4G36960.2 | Thale cress | cytosol | 66.67 | 63.85 |
| CDY69852 | Canola | cytosol | 66.67 | 63.35 |
| Bra017802.1-P | Field mustard | nucleus | 65.84 | 58.58 |
| CDX69279 | Canola | nucleus | 23.42 | 36.02 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 25.62 | 31.85 |
| Os02t0221500-01 | Rice | nucleus | 27.0 | 24.69 |
| Os08t0320100-01 | Rice | nucleus | 23.14 | 24.0 |
| Os11t0637700-01 | Rice | plasma membrane | 29.2 | 22.7 |
| Os07t0584500-01 | Rice | nucleus | 27.55 | 21.19 |
| Os07t0124600-01 | Rice | nucleus | 21.49 | 20.69 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 13.5 | 17.82 |
| Os01t0614500-01 | Rice | nucleus | 21.21 | 17.23 |
| Os02t0755400-01 | Rice | plastid | 8.26 | 17.05 |
| Os01t0876800-00 | Rice | nucleus | 13.77 | 16.67 |
| Os01t0958500-01 | Rice | nucleus | 13.77 | 16.13 |
| Os02t0714000-01 | Rice | nucleus, plastid | 12.67 | 16.03 |
| Os08t0492100-02 | Rice | nucleus | 18.18 | 15.14 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 12.12 | 14.19 |
| Os01t0265800-01 | Rice | nucleus | 18.46 | 13.67 |
| Os02t0602600-00 | Rice | nucleus | 13.77 | 12.95 |
| Os06t0220600-01 | Rice | plastid | 12.12 | 12.83 |
| Os04t0636900-02 | Rice | nucleus | 18.18 | 12.82 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4325826 | EMBL:AK060921 | EMBL:AK072850 | ProteinID:BAD88026.1 |
| ProteinID:BAF07294.2 | ProteinID:BAS76196.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0055085 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0945800 |
| EnsemblPlants:Os01t0945800-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45519 | UniProt:Q5JKI1 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00004C2B51 | RefSeq:XP_015641898.1 | SEG:seg |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0945800-01)
Coordinates
chr1:-:41573942..41578783
Molecular Weight (calculated)
40075.9 Da
IEP (calculated)
7.117
GRAVY (calculated)
-0.590
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKLVVLGI PWDVDTEGLR EYMGKFGPLD DCVVMKERSS GRSRGFGYVT FSSADDAKNV LECEHVLGNR TLEVKIATPK EEMKSQGSKK ATRIFVARIP
101: QSVDESMFRR HFEAYGEITD LYMPKEHGSK GHRGIGFITF QSAESVDSIM QDSHELDGTT VVVDRATPKD EEVRYPPSRG ASQGGYGAYN AYISAATRYA
201: ALGAPTLYDH PGSAYGRGGY YGSSQGMGNK KIFVGRLPQE ANTEDLRHYF GKFGRIVDAY IPKDPKRSGH RGFGFVTFAD EGVADRVARR SHEILGHEVA
301: IDTAAPLEGD SGGGYMEPMD LYGAYGSMRT YGRFCSGIDY DYGYGHSGSS SSRSRADWRY RPY
101: QSVDESMFRR HFEAYGEITD LYMPKEHGSK GHRGIGFITF QSAESVDSIM QDSHELDGTT VVVDRATPKD EEVRYPPSRG ASQGGYGAYN AYISAATRYA
201: ALGAPTLYDH PGSAYGRGGY YGSSQGMGNK KIFVGRLPQE ANTEDLRHYF GKFGRIVDAY IPKDPKRSGH RGFGFVTFAD EGVADRVARR SHEILGHEVA
301: IDTAAPLEGD SGGGYMEPMD LYGAYGSMRT YGRFCSGIDY DYGYGHSGSS SSRSRADWRY RPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.