Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 89.82 | 87.28 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 88.36 | 85.26 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 88.73 | 85.02 |
| EER90058 | Sorghum | plastid | 86.55 | 83.22 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 84.0 | 82.8 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 82.55 | 77.21 |
| Zm00001d046716_P001 | Maize | nucleus | 80.73 | 61.67 |
| AT5G53720.1 | Thale cress | cytosol | 18.18 | 50.0 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.55 | 47.46 |
| PGSC0003DMT400025900 | Potato | nucleus | 48.73 | 46.69 |
| CDY51790 | Canola | cytosol | 17.82 | 45.79 |
| Os02t0714000-01 | Rice | nucleus, plastid | 45.82 | 43.9 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.82 | 43.75 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 25.09 | 43.4 |
| Os02t0755400-01 | Rice | plastid | 27.64 | 43.18 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 37.82 | 43.15 |
| Os01t0876800-00 | Rice | nucleus | 42.55 | 39.0 |
| KRH53608 | Soybean | nucleus | 33.82 | 37.8 |
| KRH64318 | Soybean | nucleus | 34.18 | 36.58 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 31.27 | 36.44 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 34.18 | 35.61 |
| AT5G53680.1 | Thale cress | cytosol | 21.82 | 35.5 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 21.09 | 33.14 |
| Os01t0958500-01 | Rice | nucleus | 37.09 | 32.9 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 35.27 | 31.29 |
| Os06t0220600-01 | Rice | plastid | 36.36 | 29.15 |
| Bra029612.1-P | Field mustard | nucleus | 19.27 | 18.47 |
| AT3G06970.1 | Thale cress | nucleus | 19.27 | 16.72 |
| CDY05301 | Canola | nucleus | 20.36 | 15.95 |
| CDY24657 | Canola | nucleus | 19.64 | 15.88 |
| Os01t0614500-01 | Rice | nucleus | 25.09 | 15.44 |
| Os02t0221500-01 | Rice | nucleus | 21.45 | 14.86 |
| CDY08023 | Canola | nucleus | 18.91 | 14.44 |
| Os08t0320100-01 | Rice | nucleus | 18.18 | 14.29 |
| CDX74070 | Canola | cytosol | 18.55 | 14.17 |
| Bra001228.1-P | Field mustard | cytosol | 18.18 | 13.81 |
| Os01t0945800-01 | Rice | nucleus | 17.82 | 13.5 |
| Os11t0637700-01 | Rice | plasma membrane | 21.82 | 12.85 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 13.45 | 12.67 |
| Os07t0584500-01 | Rice | nucleus | 21.45 | 12.5 |
| Os07t0124600-01 | Rice | nucleus | 16.0 | 11.67 |
| Os01t0265800-01 | Rice | nucleus | 20.0 | 11.22 |
| Os02t0602600-00 | Rice | nucleus | 15.64 | 11.14 |
| Os05t0376000-00 | Rice | cytosol | 7.64 | 10.05 |
| Os04t0636900-02 | Rice | nucleus | 18.55 | 9.9 |
| Os08t0492100-02 | Rice | nucleus | 11.27 | 7.11 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4341556 | ProteinID:BAD35379.1 | ProteinID:BAD35670.1 | ProteinID:BAF20016.1 |
| ProteinID:BAS98677.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0622900 | EnsemblPlants:Os06t0622900-01 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF2 | UniProt:Q69U07 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0000403791 | RefSeq:XP_015643269.1 | SEG:seg | : | : |
Description
Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2. (Os06t0622900-01)
Coordinates
chr6:-:25054771..25058817
Molecular Weight (calculated)
29595.9 Da
IEP (calculated)
8.488
GRAVY (calculated)
-0.414
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPQRSPAAA AAGGGGTPAL HYLSGPYGDT TYTKVFVGGL AWETRSEGLR AHFEAYGEIL EAVVITDRAT GRSKGYGFVT FRDPDSARMA CMDPYPVIDG
101: RRANCNLAIL GRPGPDIPFA PLRPVIPYNG GVAVPGGMYV QSPTYQQPPY NYPQAFVYPS YGPSTYGPEY MYPQNAYGSY VGQQYVPVYG GPRTVGPAVY
201: PYGQFGQPVP GDQPYSPGYV PGHILPLSNQ NAANVVRMST VQQQYPPGAP RPQQQLLIPA RAQFTPNNIS EQTSG
101: RRANCNLAIL GRPGPDIPFA PLRPVIPYNG GVAVPGGMYV QSPTYQQPPY NYPQAFVYPS YGPSTYGPEY MYPQNAYGSY VGQQYVPVYG GPRTVGPAVY
201: PYGQFGQPVP GDQPYSPGYV PGHILPLSNQ NAANVVRMST VQQQYPPGAP RPQQQLLIPA RAQFTPNNIS EQTSG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.