Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28822 | Canola | cytosol, nucleus, plastid | 76.0 | 67.86 |
| CDY51790 | Canola | cytosol | 71.0 | 66.36 |
| AT5G53680.1 | Thale cress | cytosol | 62.0 | 36.69 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 59.0 | 33.71 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 50.0 | 31.45 |
| HORVU6Hr1G070140.3 | Barley | plastid | 47.0 | 30.13 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 44.0 | 29.14 |
| HORVU6Hr1G070150.1 | Barley | plastid | 47.0 | 28.14 |
| Os02t0755400-01 | Rice | plastid | 48.0 | 27.27 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 48.0 | 27.12 |
| Zm00001d052212_P001 | Maize | nucleus | 43.0 | 26.71 |
| KRH64318 | Soybean | nucleus | 54.0 | 21.01 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 50.0 | 20.75 |
| KRH53608 | Soybean | nucleus | 51.0 | 20.73 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 49.0 | 20.33 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 46.0 | 19.49 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 46.0 | 18.47 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 50.0 | 18.18 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 45.0 | 18.07 |
| AT1G33470.1 | Thale cress | cytosol | 44.0 | 17.96 |
| AT1G76460.1 | Thale cress | nucleus | 51.0 | 17.89 |
| EER90058 | Sorghum | plastid | 51.0 | 17.83 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 49.0 | 17.56 |
| AT1G20880.1 | Thale cress | nucleus | 48.0 | 17.52 |
| AT1G78260.1 | Thale cress | nucleus | 50.0 | 17.42 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 49.0 | 17.31 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 50.0 | 17.24 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 49.0 | 17.19 |
| PGSC0003DMT400025900 | Potato | nucleus | 49.0 | 17.07 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 49.0 | 17.07 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 45.0 | 17.05 |
| TraesCS6B01G306600.1 | Wheat | plastid | 48.0 | 16.84 |
| AT1G22330.1 | Thale cress | nucleus | 49.0 | 16.84 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 46.0 | 16.79 |
| Os02t0714000-01 | Rice | nucleus, plastid | 48.0 | 16.72 |
| TraesCS6D01G258900.4 | Wheat | plastid | 48.0 | 16.67 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 45.0 | 16.48 |
| TraesCS6A01G278300.3 | Wheat | plastid | 48.0 | 16.44 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 48.0 | 16.33 |
| AT3G54770.1 | Thale cress | nucleus | 42.0 | 16.09 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 48.0 | 16.05 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 48.0 | 15.95 |
| OQU85520 | Sorghum | nucleus, plastid | 47.0 | 15.93 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 47.0 | 15.67 |
| AT2G46780.1 | Thale cress | nucleus | 52.0 | 15.48 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 47.0 | 15.46 |
| KXG30724 | Sorghum | plastid | 45.0 | 14.52 |
| AT3G06970.1 | Thale cress | nucleus | 46.0 | 14.51 |
| TraesCS6B01G348100.1 | Wheat | plastid | 45.0 | 14.47 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 48.0 | 14.46 |
| TraesCS6D01G297300.1 | Wheat | plastid | 45.0 | 14.42 |
| HORVU6Hr1G078060.1 | Barley | plastid | 45.0 | 14.24 |
| Zm00001d037209_P001 | Maize | plastid | 47.0 | 14.16 |
| Zm00001d046716_P001 | Maize | nucleus | 50.0 | 13.89 |
| Zm00001d018103_P002 | Maize | plasma membrane | 44.0 | 13.84 |
| Os06t0220600-01 | Rice | plastid | 47.0 | 13.7 |
| Zm00001d017829_P002 | Maize | plastid | 47.0 | 13.62 |
| OQU76075 | Sorghum | plastid | 48.0 | 13.6 |
| Zm00001d051627_P002 | Maize | plastid | 48.0 | 13.04 |
| AT1G22910.3 | Thale cress | nucleus | 45.0 | 12.97 |
| AT2G22090.2 | Thale cress | nucleus | 44.0 | 12.68 |
| AT2G22100.1 | Thale cress | nucleus | 38.0 | 9.95 |
| AT3G15010.2 | Thale cress | nucleus | 39.0 | 9.65 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 44.0 | 9.03 |
| AT2G41060.3 | Thale cress | nucleus | 37.0 | 8.2 |
| AT1G17640.1 | Thale cress | nucleus | 30.0 | 8.13 |
| AT3G56860.10 | Thale cress | nucleus | 37.0 | 7.74 |
| AT2G33410.1 | Thale cress | nucleus | 29.0 | 7.18 |
| AT4G36960.2 | Thale cress | cytosol | 27.0 | 7.12 |
| AT4G14300.1 | Thale cress | nucleus | 29.0 | 7.06 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 25.0 | 6.94 |
| AT4G26650.1 | Thale cress | nucleus | 31.0 | 6.81 |
| AT3G07810.2 | Thale cress | nucleus | 32.0 | 6.46 |
| AT3G13224.2 | Thale cress | nucleus | 23.0 | 6.42 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 29.0 | 6.4 |
| AT5G55550.10 | Thale cress | nucleus | 31.0 | 6.11 |
| AT2G19380.1 | Thale cress | nucleus | 34.0 | 5.55 |
| AT5G40490.1 | Thale cress | nucleus | 23.0 | 5.44 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:835453 | ProteinID:AED96398.1 | ArrayExpress:AT5G53720 | EnsemblPlantsGene:AT5G53720 |
| RefSeq:AT5G53720 | TAIR:AT5G53720 | RefSeq:AT5G53720-TAIR-G | EnsemblPlants:AT5G53720.1 | TAIR:AT5G53720.1 | Unigene:At.55532 |
| ProteinID:BAB09544.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_200183.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | UniProt:Q9FI04 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00000A6687 | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FI04]
Coordinates
chr5:+:21806622..21807012
Molecular Weight (calculated)
11383.4 Da
IEP (calculated)
8.462
GRAVY (calculated)
-0.492
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MSHPNDRETK IYVAGLPWIT RTEGLISYFE RFGEIVYAKV VCDGATQRSK GFGFVTFREV ESATRACENP NHTIDGRTVN CKLAYLGARV HNYQPNQYGY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.