Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G225900.1 | Wheat | nucleus | 84.31 | 92.77 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 92.34 | 92.67 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 83.21 | 91.57 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 12.77 | 52.24 |
| AT5G53720.1 | Thale cress | cytosol | 16.79 | 46.0 |
| CDY51790 | Canola | cytosol | 17.15 | 43.93 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 27.37 | 42.37 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.15 | 41.96 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 23.72 | 40.88 |
| HORVU6Hr1G070150.1 | Barley | plastid | 24.45 | 40.12 |
| HORVU6Hr1G070140.3 | Barley | plastid | 22.26 | 39.1 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 31.02 | 35.27 |
| KRH64318 | Soybean | nucleus | 31.02 | 33.07 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 31.75 | 32.95 |
| KRH53608 | Soybean | nucleus | 29.56 | 32.93 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 28.1 | 32.63 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.94 | 32.4 |
| AT5G53680.1 | Thale cress | cytosol | 19.34 | 31.36 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 34.31 | 30.03 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 18.61 | 29.14 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 31.02 | 28.91 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 30.66 | 28.09 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 29.56 | 26.13 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 30.66 | 25.3 |
| HORVU6Hr1G078060.1 | Barley | plastid | 27.01 | 23.42 |
| Bra029612.1-P | Field mustard | nucleus | 18.98 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 20.07 | 17.35 |
| CDY24657 | Canola | nucleus | 20.07 | 16.18 |
| CDY05301 | Canola | nucleus | 20.44 | 15.95 |
| CDX74070 | Canola | cytosol | 18.98 | 14.44 |
| CDY08023 | Canola | nucleus | 18.98 | 14.44 |
| HORVU6Hr1G054690.5 | Barley | plastid | 9.49 | 13.83 |
| Bra001228.1-P | Field mustard | cytosol | 17.88 | 13.54 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 18.98 | 13.03 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 20.8 | 12.93 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 20.8 | 12.31 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 17.88 | 11.84 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 16.06 | 11.83 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 15.33 | 11.32 |
| HORVU6Hr1G040220.5 | Barley | plastid | 18.61 | 10.99 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 14.6 | 10.99 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 13.5 | 10.45 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 18.98 | 10.2 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 12.77 | 9.67 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 16.79 | 9.43 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 7.3 | 4.93 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G063360.1 | EnsemblPlantsGene:HORVU4Hr1G063360 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PANTHER:PTHR44374:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B483FF3 | UniProt:A0A287PBW7 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:530913834..530918979
Molecular Weight (calculated)
29135.4 Da
IEP (calculated)
7.083
GRAVY (calculated)
-0.559
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDTTFTKL FVGGLAWQTQ RDAMRRYFEQ FGDIAEAVVI ADKHTGRSRG YGFVTFRDPE AAARALQDPT PMIDGRRANC NLAALGASQR AHPAAAAPFG
101: MVRSTPPATS SSSYQGSAAA AIAASYFPQQ AHYTYPYYYG YTGGFSHENM YQMQMNYYGA HGGAGVHQQQ QQQSQVQTYY TAAGPKGAQQ GFPPYYLQQM
201: QAASNQGQNS AAAALQYSQM MQYAAHMQQA AHDAAGLHGA DASESAGDAA KGTGGAAAAV GSDTSSDTDR RTAH
101: MVRSTPPATS SSSYQGSAAA AIAASYFPQQ AHYTYPYYYG YTGGFSHENM YQMQMNYYGA HGGAGVHQQQ QQQSQVQTYY TAAGPKGAQQ GFPPYYLQQM
201: QAASNQGQNS AAAALQYSQM MQYAAHMQQA AHDAAGLHGA DASESAGDAA KGTGGAAAAV GSDTSSDTDR RTAH
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.