Factsheet for HORVU5Hr1G098440.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G415400.1	Wheat	nucleus	73.48	76.88
TraesCS5A01G405300.1	Wheat	nucleus	75.97	76.6
TraesCS5B01G410100.1	Wheat	nucleus	73.2	75.5
HORVU2Hr1G061380.2	Barley	nucleus	40.06	38.98
GSMUA_Achr4P32300_001	Banana	nucleus	11.88	29.25
HORVU7Hr1G036900.1	Barley	cytosol, plastid	4.97	26.87
GSMUA_Achr4P28100_001	Banana	nucleus	30.66	25.11
GSMUA_Achr7P00730_001	Banana	cytosol	11.05	22.1
HORVU0Hr1G008280.1	Barley	nucleus	26.24	20.52
HORVU7Hr1G060930.1	Barley	plasma membrane	19.89	20.34
HORVU1Hr1G039790.1	Barley	nucleus	26.8	19.02
HORVU1Hr1G057660.1	Barley	cytosol	18.23	18.13
HORVU6Hr1G054690.5	Barley	plastid	9.39	18.09
HORVU7Hr1G087550.1	Barley	nucleus	19.61	17.79
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	17.96	17.52
HORVU6Hr1G070150.1	Barley	plastid	7.73	16.77
HORVU6Hr1G070140.3	Barley	plastid	6.91	16.03
HORVU6Hr1G040220.5	Barley	plastid	19.89	15.52
HORVU3Hr1G053990.1	Barley	nucleus	17.13	14.06
HORVU2Hr1G116150.4	Barley	nucleus	15.75	13.77
HORVU7Hr1G093450.6	Barley	nucleus	11.05	13.61
HORVU4Hr1G063360.1	Barley	nucleus	9.67	12.77
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	10.22	12.37
HORVU6Hr1G078060.1	Barley	plastid	10.77	12.34
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	10.77	11.75
HORVU3Hr1G037280.1	Barley	nucleus, plastid	15.19	11.27
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	9.12	10.54
HORVU4Hr1G057110.23	Barley	nucleus	8.84	10.32
HORVU2Hr1G116230.1	Barley	nucleus	10.22	9.11
CDX69277	Canola	mitochondrion	3.59	6.99

Protein Annotations

EnsemblPlants:HORVU5Hr1G098440.5	EnsemblPlantsGene:HORVU5Hr1G098440	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B473E4E
UniProt:A0A287SGD4	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:607708759..607711985

Molecular Weight (calculated)

41056.1 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.710

Length

362 amino acids

Sequence
(BLAST)

001: ETRKLYVGGL PPSAQQDELK DHFSRYGDVL CVRVVRDWET GQGRGFAFVE FADEEGARAA LQEKEKANHV FGDRTVDVKR ARTRPMRYQN EQPFYQRPSH
101: QSPMQSPIHN QWYTQSSSNN SYAGNGHRSN DAKKVFVGGL RGNITKEHLQ SYFEKFGNIT DVVVIREGGT QRSRGFGFIT FDSDEAMSKV LESKYHDLNG
201: TKVETKVAIP KDHSYYQERQ QYSPMTWDGN YPPIGYTGVY PPHMQYIINN HYMMPVPQYM CSPSGEYGYI MNGGGPVVRQ GPLYTGYVTP IGYGYGAQVV
301: DAKSDSKMIQ DITEEQVDLP STNNISKQES LGIELLLQHC NDGQQLVILE LSNCEDLMKF FG

Best Arabidopsis Sequence Match ( AT5G55550.1 )
(BLAST)

001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.