Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G063590.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | HORVU1Hr1G063590.1 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 94.25 | 93.35 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 92.97 | 93.27 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 92.97 | 93.27 |
| KRH75298 | Soybean | cytosol, nucleus | 22.04 | 69.7 |
| Os01t0958500-01 | Rice | nucleus | 67.73 | 68.39 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 13.42 | 62.69 |
| KRH13261 | Soybean | cytosol | 24.28 | 61.29 |
| EES02078 | Sorghum | nucleus | 60.7 | 56.21 |
| Zm00001d042042_P001 | Maize | nucleus | 59.42 | 54.71 |
| KRH40033 | Soybean | nucleus | 41.53 | 47.79 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 40.58 | 47.21 |
| KRH23771 | Soybean | nucleus | 40.89 | 47.06 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.98 | 46.21 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 38.02 | 45.59 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 37.7 | 45.04 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 38.66 | 44.81 |
| Bra024547.1-P | Field mustard | nucleus | 34.19 | 44.77 |
| CDY04769 | Canola | nucleus | 33.55 | 44.3 |
| GSMUA_Achr10P... | Banana | nucleus | 38.34 | 44.28 |
| CDY69197 | Canola | nucleus | 31.63 | 44.0 |
| CDX73279 | Canola | cytosol | 33.87 | 43.8 |
| AT1G33470.1 | Thale cress | cytosol | 34.19 | 43.67 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 35.78 | 43.24 |
| HORVU6Hr1G070150.1 | Barley | plastid | 22.68 | 42.52 |
| Bra012350.1-P | Field mustard | nucleus | 33.55 | 42.17 |
| CDY25759 | Canola | nucleus | 33.23 | 41.77 |
| HORVU6Hr1G070140.3 | Barley | plastid | 20.77 | 41.67 |
| KRH62942 | Soybean | mitochondrion | 24.92 | 38.24 |
| Bra010203.1-P | Field mustard | nucleus | 34.19 | 35.08 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 30.03 | 34.31 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 31.31 | 33.33 |
| CDY67263 | Canola | nucleus | 34.19 | 32.62 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 30.03 | 31.44 |
| AT1G22910.3 | Thale cress | nucleus | 34.82 | 31.41 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 30.67 | 30.97 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 30.67 | 28.92 |
| HORVU6Hr1G078060.1 | Barley | plastid | 27.48 | 27.22 |
| CDY13339 | Canola | mitochondrion | 14.38 | 26.79 |
| CDY21399 | Canola | mitochondrion | 11.18 | 24.14 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 37.38 | 17.54 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 17.25 | 13.53 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 18.85 | 13.38 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 14.7 | 12.99 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 15.02 | 12.91 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 15.02 | 12.67 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 16.61 | 12.56 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 18.21 | 12.31 |
| HORVU6Hr1G054690.5 | Barley | plastid | 7.35 | 12.23 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 14.06 | 11.83 |
| HORVU6Hr1G040220.5 | Barley | plastid | 17.25 | 11.64 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 17.25 | 10.59 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 10.54 | 9.12 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 13.74 | 8.81 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 7.03 | 5.42 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G110370.1 | EnsemblPlantsGene:HORVU3Hr1G110370 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PANTHER:PTHR44374:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002966D83 | UniProt:M0WCF3 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:681474226..681481118
Molecular Weight (calculated)
32601.8 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.123
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMAHQAMAA GGGDTRMTKV FVGGLAWETS KEGVRGHFER FGEILEAVVI ADKGTGRSKG YGFVTFREAE AAMRACLDPY PVIDGRRANC NLACLGVQRS
101: KAPQPLPYLQ PYAAVGPVHG GGNINTRAMK AAIAGGGGGG ASFVDHGIQQ GIPAAAYNMY GYSPYFSDYG YQPLTYYQAY GGLAGGAQYQ VFNGGATTAP
201: PAGLAMADPT GLYPYCQYAP SVNAAAAYSM MQYPQMYQYA AVGAPPDSSP TAVSGLHQFI GAAAFEPSTG NQAGGMTLAQ LTAPALPASA PQYQYRLISP
301: MPIATPDQKK PLA
101: KAPQPLPYLQ PYAAVGPVHG GGNINTRAMK AAIAGGGGGG ASFVDHGIQQ GIPAAAYNMY GYSPYFSDYG YQPLTYYQAY GGLAGGAQYQ VFNGGATTAP
201: PAGLAMADPT GLYPYCQYAP SVNAAAAYSM MQYPQMYQYA AVGAPPDSSP TAVSGLHQFI GAAAFEPSTG NQAGGMTLAQ LTAPALPASA PQYQYRLISP
301: MPIATPDQKK PLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVPQ A
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVPQ A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.