Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69197 | Canola | nucleus | 55.91 | 86.22 |
| Bra024547.1-P | Field mustard | nucleus | 57.93 | 84.1 |
| CDY04769 | Canola | nucleus | 57.35 | 83.97 |
| Bra012350.1-P | Field mustard | nucleus | 59.37 | 82.73 |
| CDY25759 | Canola | nucleus | 59.08 | 82.33 |
| CDY21399 | Canola | mitochondrion | 32.28 | 77.24 |
| KRH75298 | Soybean | cytosol, nucleus | 21.61 | 75.76 |
| CDY67263 | Canola | nucleus | 68.3 | 72.26 |
| KRH13261 | Soybean | cytosol | 24.78 | 69.35 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 39.77 | 51.3 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.9 | 51.14 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 38.33 | 50.96 |
| KRH23771 | Soybean | nucleus | 39.19 | 50.0 |
| KRH40033 | Soybean | nucleus | 38.9 | 49.63 |
| EES01849 | Sorghum | nucleus | 34.58 | 45.8 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 34.29 | 45.42 |
| GSMUA_Achr10P... | Banana | nucleus | 35.45 | 45.39 |
| AT5G53720.1 | Thale cress | cytosol | 12.97 | 45.0 |
| AT1G33470.1 | Thale cress | cytosol | 31.7 | 44.9 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 34.87 | 44.81 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 33.43 | 44.79 |
| Zm00001d042641_P001 | Maize | nucleus | 36.31 | 42.71 |
| Os01t0876800-00 | Rice | nucleus | 36.6 | 42.33 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 36.02 | 42.23 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 36.02 | 42.23 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 36.02 | 42.09 |
| KRH62942 | Soybean | mitochondrion | 24.21 | 41.18 |
| AT1G20880.1 | Thale cress | nucleus | 31.12 | 39.42 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 36.6 | 37.35 |
| AT1G76460.1 | Thale cress | nucleus | 30.55 | 37.19 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 31.7 | 35.26 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 31.7 | 35.26 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 31.41 | 34.82 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 31.7 | 34.81 |
| Os01t0958500-01 | Rice | nucleus | 29.39 | 32.9 |
| AT3G54770.1 | Thale cress | nucleus | 24.5 | 32.57 |
| AT5G53680.1 | Thale cress | cytosol | 15.85 | 32.54 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 15.85 | 31.43 |
| EES02078 | Sorghum | nucleus | 30.26 | 31.07 |
| AT2G46780.1 | Thale cress | nucleus | 29.39 | 30.36 |
| Zm00001d042042_P001 | Maize | nucleus | 29.11 | 29.71 |
| AT1G78260.1 | Thale cress | nucleus | 24.5 | 29.62 |
| AT1G22330.1 | Thale cress | nucleus | 23.92 | 28.52 |
| CDY13339 | Canola | mitochondrion | 12.1 | 25.0 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 33.72 | 17.54 |
| AT1G17640.1 | Thale cress | nucleus | 16.14 | 15.18 |
| AT3G06970.1 | Thale cress | nucleus | 13.54 | 14.83 |
| AT2G22090.2 | Thale cress | nucleus | 13.54 | 13.54 |
| AT3G13224.2 | Thale cress | nucleus | 13.83 | 13.41 |
| AT3G15010.2 | Thale cress | nucleus | 15.27 | 13.12 |
| AT2G33410.1 | Thale cress | nucleus | 14.7 | 12.62 |
| AT4G36960.2 | Thale cress | cytosol | 13.54 | 12.4 |
| AT5G40490.1 | Thale cress | nucleus | 14.99 | 12.29 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 12.39 | 11.94 |
| AT4G14300.1 | Thale cress | nucleus | 14.12 | 11.92 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 14.99 | 11.48 |
| AT3G07810.2 | Thale cress | nucleus | 15.85 | 11.11 |
| AT4G26650.1 | Thale cress | nucleus | 14.12 | 10.77 |
| AT3G56860.10 | Thale cress | nucleus | 14.41 | 10.46 |
| AT2G41060.3 | Thale cress | nucleus | 13.54 | 10.42 |
| AT2G22100.1 | Thale cress | nucleus | 10.66 | 9.69 |
| AT5G55550.10 | Thale cress | nucleus | 13.54 | 9.27 |
| AT2G19380.1 | Thale cress | nucleus | 11.24 | 6.36 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:838898 | ProteinID:AEE30308.1 | ArrayExpress:AT1G22910 | EnsemblPlantsGene:AT1G22910 |
| RefSeq:AT1G22910 | TAIR:AT1G22910 | RefSeq:AT1G22910-TAIR-G | EnsemblPlants:AT1G22910.3 | TAIR:AT1G22910.3 | UniProt:F4I321 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_973889.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000034F3C8 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
Coordinates
chr1:+:8105589..8108164
Molecular Weight (calculated)
37842.0 Da
IEP (calculated)
9.710
GRAVY (calculated)
-0.254
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.