Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004508.1-P | Field mustard | nucleus | 81.55 | 87.82 |
| CDX80046 | Canola | nucleus | 82.44 | 87.66 |
| CDY41557 | Canola | nucleus | 82.14 | 87.34 |
| CDY48016 | Canola | nucleus | 83.93 | 86.5 |
| Bra040485.1-P | Field mustard | nucleus | 83.93 | 86.5 |
| CDY27523 | Canola | nucleus | 82.74 | 86.07 |
| CDY41556 | Canola | nucleus | 74.11 | 85.86 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 45.54 | 57.3 |
| AT5G53720.1 | Thale cress | cytosol | 15.48 | 52.0 |
| KRH06384 | Soybean | nucleus | 44.64 | 49.83 |
| KRH47819 | Soybean | nucleus | 43.75 | 49.66 |
| KRH06373 | Soybean | nucleus | 40.77 | 49.46 |
| KRH47808 | Soybean | nucleus | 38.39 | 45.1 |
| AT1G33470.1 | Thale cress | cytosol | 31.25 | 42.86 |
| AT1G78260.1 | Thale cress | nucleus | 33.93 | 39.72 |
| AT1G20880.1 | Thale cress | nucleus | 30.95 | 37.96 |
| AT1G76460.1 | Thale cress | nucleus | 31.25 | 36.84 |
| AT1G22330.1 | Thale cress | nucleus | 31.55 | 36.43 |
| AT3G54770.1 | Thale cress | nucleus | 28.27 | 36.4 |
| AT5G53680.1 | Thale cress | cytosol | 17.26 | 34.32 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 16.96 | 32.57 |
| AT1G22910.3 | Thale cress | nucleus | 30.36 | 29.39 |
| AT3G06970.1 | Thale cress | nucleus | 16.96 | 17.98 |
| AT1G17640.1 | Thale cress | nucleus | 17.26 | 15.72 |
| AT3G15010.2 | Thale cress | nucleus | 16.96 | 14.11 |
| AT2G33410.1 | Thale cress | nucleus | 16.67 | 13.86 |
| AT2G22090.2 | Thale cress | nucleus | 14.29 | 13.83 |
| AT3G13224.2 | Thale cress | nucleus | 13.69 | 12.85 |
| AT4G14300.1 | Thale cress | nucleus | 15.48 | 12.65 |
| AT2G41060.3 | Thale cress | nucleus | 16.67 | 12.42 |
| AT4G36960.2 | Thale cress | cytosol | 13.69 | 12.14 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 12.8 | 11.94 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 16.07 | 11.92 |
| AT5G40490.1 | Thale cress | nucleus | 13.99 | 11.11 |
| AT3G07810.2 | Thale cress | nucleus | 16.07 | 10.91 |
| AT4G26650.1 | Thale cress | nucleus | 14.58 | 10.77 |
| AT2G22100.1 | Thale cress | nucleus | 12.2 | 10.73 |
| AT3G56860.10 | Thale cress | nucleus | 14.88 | 10.46 |
| AT5G55550.10 | Thale cress | nucleus | 15.18 | 10.06 |
| AT2G19380.1 | Thale cress | nucleus | 13.69 | 7.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:819291 | UniProt:A0A178VTE7 | ProteinID:AEC10751.1 | ProteinID:ANM61933.1 |
| ArrayExpress:AT2G46780 | EnsemblPlantsGene:AT2G46780 | RefSeq:AT2G46780 | TAIR:AT2G46780 | RefSeq:AT2G46780-TAIR-G | EnsemblPlants:AT2G46780.1 |
| TAIR:AT2G46780.1 | EMBL:BT022057 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_001324122.1 | RefSeq:NP_182201.4 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP08333.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF3 | UniProt:Q501B0 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000050C028 | SEG:seg | : | : |
Description
At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
Coordinates
chr2:+:19229070..19231539
Molecular Weight (calculated)
36706.7 Da
IEP (calculated)
9.430
GRAVY (calculated)
-0.656
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.