Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- mitochondrion 2
- nucleus 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87460 | Canola | nucleus | 92.33 | 92.98 |
| CDX88432 | Canola | nucleus | 91.64 | 92.61 |
| CDX68024 | Canola | nucleus | 85.37 | 86.57 |
| CDX79253 | Canola | nucleus | 82.93 | 85.0 |
| Bra003651.1-P | Field mustard | nucleus | 77.7 | 82.29 |
| AT1G22330.1 | Thale cress | nucleus | 74.56 | 73.54 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 56.45 | 58.7 |
| KRH16743 | Soybean | nucleus | 54.36 | 56.93 |
| KRH18921 | Soybean | nucleus | 54.01 | 56.16 |
| Solyc04g074310.2.1 | Tomato | nucleus | 54.01 | 52.9 |
| KRH62327 | Soybean | nucleus | 51.92 | 51.92 |
| KRH53044 | Soybean | nucleus | 51.22 | 51.22 |
| AT5G53720.1 | Thale cress | cytosol | 17.42 | 50.0 |
| AT1G76460.1 | Thale cress | nucleus | 37.63 | 37.89 |
| AT1G20880.1 | Thale cress | nucleus | 34.15 | 35.77 |
| AT1G33470.1 | Thale cress | cytosol | 30.31 | 35.51 |
| AT2G46780.1 | Thale cress | nucleus | 39.72 | 33.93 |
| AT3G54770.1 | Thale cress | nucleus | 29.97 | 32.95 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 18.82 | 30.86 |
| AT5G53680.1 | Thale cress | cytosol | 18.12 | 30.77 |
| AT1G22910.3 | Thale cress | nucleus | 29.62 | 24.5 |
| AT3G06970.1 | Thale cress | nucleus | 19.16 | 17.35 |
| AT3G15010.2 | Thale cress | nucleus | 21.25 | 15.1 |
| AT1G17640.1 | Thale cress | nucleus | 17.42 | 13.55 |
| AT2G22090.2 | Thale cress | nucleus | 16.38 | 13.54 |
| AT3G13224.2 | Thale cress | nucleus | 15.68 | 12.57 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 19.16 | 12.14 |
| AT5G40490.1 | Thale cress | nucleus | 17.77 | 12.06 |
| AT2G33410.1 | Thale cress | nucleus | 16.72 | 11.88 |
| AT2G41060.3 | Thale cress | nucleus | 18.47 | 11.75 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 14.29 | 11.39 |
| AT4G14300.1 | Thale cress | nucleus | 16.03 | 11.19 |
| AT3G56860.10 | Thale cress | nucleus | 18.47 | 11.09 |
| AT4G36960.2 | Thale cress | cytosol | 13.94 | 10.55 |
| AT3G07810.2 | Thale cress | nucleus | 18.12 | 10.51 |
| AT2G22100.1 | Thale cress | nucleus | 12.89 | 9.69 |
| AT4G26650.1 | Thale cress | nucleus | 14.29 | 9.01 |
| AT5G55550.10 | Thale cress | nucleus | 14.63 | 8.28 |
| AT2G19380.1 | Thale cress | nucleus | 13.24 | 6.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:844161 | ProteinID:AEE36087.1 | ArrayExpress:AT1G78260 | EnsemblPlantsGene:AT1G78260 |
| RefSeq:AT1G78260 | TAIR:AT1G78260 | RefSeq:AT1G78260-TAIR-G | EnsemblPlants:AT1G78260.1 | TAIR:AT1G78260.1 | EMBL:AY084982 |
| Unigene:At.43623 | EMBL:BT030002 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_565175.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF3 | UniProt:Q8LF90 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000A1B79 | SEG:seg | : | : | : | : |
Description
At1g78260 [Source:UniProtKB/TrEMBL;Acc:Q8LF90]
Coordinates
chr1:+:29446861..29450515
Molecular Weight (calculated)
31469.2 Da
IEP (calculated)
7.284
GRAVY (calculated)
-0.746
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQTSYYRSP FGDTTYTKVF VGGLAWETPT DEMRRYFEQF GEILEAVIIT DKNTGKSKGY GFVTFRESDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.