Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66272 | Canola | nucleus | 89.09 | 90.18 |
| Bra040031.1-P | Field mustard | nucleus | 88.48 | 90.12 |
| CDY22136 | Canola | nucleus | 88.48 | 90.12 |
| CDY35966 | Canola | nucleus | 88.89 | 89.07 |
| Bra029681.1-P | Field mustard | nucleus | 89.9 | 88.82 |
| CDX74030 | Canola | nucleus | 84.44 | 88.56 |
| CDY07975 | Canola | nucleus | 84.04 | 88.32 |
| Bra001267.1-P | Field mustard | nucleus | 84.04 | 88.32 |
| GSMUA_Achr10P... | Banana | nucleus | 54.55 | 58.7 |
| GSMUA_Achr10P... | Banana | nucleus | 52.12 | 58.64 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 54.14 | 57.88 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 54.14 | 57.88 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 54.14 | 57.88 |
| TraesCSU01G068500.1 | Wheat | nucleus | 53.74 | 57.45 |
| Os11t0637700-01 | Rice | plasma membrane | 54.14 | 57.39 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 49.29 | 55.2 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 55.56 | 55.0 |
| Zm00001d007772_P001 | Maize | nucleus | 48.08 | 53.01 |
| Zm00001d019079_P001 | Maize | cytosol | 47.27 | 52.23 |
| Os07t0584500-01 | Rice | nucleus | 49.29 | 51.69 |
| EER98147 | Sorghum | nucleus | 47.27 | 51.66 |
| EER96020 | Sorghum | nucleus | 47.07 | 51.21 |
| EER97452 | Sorghum | nucleus | 48.69 | 51.17 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 48.69 | 51.17 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 48.28 | 50.85 |
| Zm00001d019084_P002 | Maize | nucleus | 46.46 | 50.66 |
| AT4G26650.1 | Thale cress | nucleus | 45.86 | 49.89 |
| Zm00001d006704_P002 | Maize | nucleus | 47.88 | 48.97 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 43.64 | 47.68 |
| OQU83904 | Sorghum | nucleus | 41.41 | 45.56 |
| Zm00001d019086_P001 | Maize | nucleus | 48.89 | 45.49 |
| TraesCS2A01G190400.1 | Wheat | plastid | 48.28 | 45.01 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 48.08 | 43.99 |
| AT5G55550.10 | Thale cress | nucleus | 44.85 | 43.79 |
| AT4G14300.1 | Thale cress | nucleus | 33.33 | 40.15 |
| AT2G33410.1 | Thale cress | nucleus | 32.53 | 39.85 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 53.94 | 39.32 |
| AT5G40490.1 | Thale cress | nucleus | 29.7 | 34.75 |
| AT3G13224.2 | Thale cress | nucleus | 25.05 | 34.64 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 25.05 | 34.44 |
| AT1G17640.1 | Thale cress | nucleus | 24.44 | 32.79 |
| AT5G53720.1 | Thale cress | cytosol | 6.46 | 32.0 |
| AT4G36960.2 | Thale cress | cytosol | 21.62 | 28.23 |
| AT5G53680.1 | Thale cress | cytosol | 7.27 | 21.3 |
| AT3G15010.2 | Thale cress | nucleus | 17.37 | 21.29 |
| AT1G33470.1 | Thale cress | cytosol | 10.51 | 21.22 |
| AT1G20880.1 | Thale cress | nucleus | 11.31 | 20.44 |
| AT3G54770.1 | Thale cress | nucleus | 10.51 | 19.92 |
| AT1G76460.1 | Thale cress | nucleus | 11.31 | 19.65 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.46 | 18.29 |
| AT1G78260.1 | Thale cress | nucleus | 10.51 | 18.12 |
| AT1G22330.1 | Thale cress | nucleus | 10.51 | 17.87 |
| AT2G41060.3 | Thale cress | nucleus | 14.75 | 16.19 |
| AT2G46780.1 | Thale cress | nucleus | 10.91 | 16.07 |
| AT1G22910.3 | Thale cress | nucleus | 11.11 | 15.85 |
| AT3G56860.10 | Thale cress | nucleus | 14.55 | 15.06 |
| AT2G22090.2 | Thale cress | nucleus | 10.51 | 14.99 |
| AT2G22100.1 | Thale cress | nucleus | 11.31 | 14.66 |
| AT3G06970.1 | Thale cress | nucleus | 9.09 | 14.2 |
| AT2G19380.1 | Thale cress | nucleus | 9.29 | 7.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:819972 | ProteinID:AEE74607.1 | ArrayExpress:AT3G07810 | EnsemblPlantsGene:AT3G07810 |
| RefSeq:AT3G07810 | TAIR:AT3G07810 | RefSeq:AT3G07810-TAIR-G | EnsemblPlants:AT3G07810.2 | TAIR:AT3G07810.2 | Unigene:At.19375 |
| InterPro:DAZAP1_RRM2 | UniProt:F4JFN7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_850539.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000196B99 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
Coordinates
chr3:+:2492293..2495750
Molecular Weight (calculated)
52058.6 Da
IEP (calculated)
8.813
GRAVY (calculated)
-0.586
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GEPSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.