Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 85.68 | 81.96 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 84.55 | 74.4 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 65.91 | 65.61 |
| Solyc04g014820.2.1 | Tomato | cytosol | 39.09 | 64.18 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 67.95 | 62.55 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 64.55 | 61.34 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 64.55 | 61.34 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 64.09 | 60.91 |
| TraesCSU01G068500.1 | Wheat | nucleus | 64.09 | 60.91 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 65.91 | 60.67 |
| Os11t0637700-01 | Rice | plasma membrane | 64.32 | 60.6 |
| PGSC0003DMT400037271 | Potato | nucleus | 64.55 | 60.43 |
| KRH74025 | Soybean | nucleus | 64.77 | 60.0 |
| KRH14098 | Soybean | nucleus | 65.23 | 59.92 |
| KRH46297 | Soybean | nucleus | 65.0 | 59.71 |
| KRG98573 | Soybean | nucleus | 64.32 | 59.08 |
| Solyc10g006050.2.1 | Tomato | nucleus | 57.95 | 58.89 |
| KRH73860 | Soybean | nucleus | 63.41 | 58.49 |
| KRH14284 | Soybean | nucleus | 63.41 | 58.37 |
| PGSC0003DMT400076643 | Potato | nucleus | 62.73 | 58.23 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 12.27 | 58.06 |
| Solyc12g014600.1.1 | Tomato | nucleus | 56.36 | 56.75 |
| Zm00001d019079_P001 | Maize | cytosol | 57.05 | 56.03 |
| EER98147 | Sorghum | nucleus | 57.27 | 55.63 |
| Zm00001d007772_P001 | Maize | nucleus | 56.59 | 55.46 |
| EER96020 | Sorghum | nucleus | 57.27 | 55.38 |
| EER97452 | Sorghum | nucleus | 58.86 | 54.99 |
| GSMUA_Achr10P... | Banana | nucleus | 30.91 | 54.84 |
| CDX74030 | Canola | nucleus | 58.64 | 54.66 |
| Bra001267.1-P | Field mustard | nucleus | 58.41 | 54.56 |
| CDY07975 | Canola | nucleus | 58.18 | 54.35 |
| Solyc07g048030.2.1 | Tomato | nucleus | 53.86 | 54.23 |
| PGSC0003DMT400074192 | Potato | nucleus | 58.41 | 54.22 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 57.73 | 54.04 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 57.73 | 53.93 |
| Zm00001d019084_P002 | Maize | nucleus | 55.45 | 53.74 |
| Bra040031.1-P | Field mustard | nucleus | 59.32 | 53.7 |
| CDY22136 | Canola | nucleus | 59.32 | 53.7 |
| Os07t0584500-01 | Rice | nucleus | 57.5 | 53.6 |
| Zm00001d006704_P002 | Maize | nucleus | 58.64 | 53.31 |
| PGSC0003DMT400034757 | Potato | nucleus | 56.14 | 52.78 |
| CDY66272 | Canola | nucleus | 58.64 | 52.76 |
| Solyc12g006180.1.1 | Tomato | nucleus | 52.05 | 52.28 |
| AT3G07810.2 | Thale cress | nucleus | 58.64 | 52.12 |
| CDY35966 | Canola | nucleus | 58.41 | 52.02 |
| Bra029681.1-P | Field mustard | nucleus | 58.86 | 51.7 |
| Solyc11g012470.1.1 | Tomato | nucleus | 50.23 | 51.64 |
| PGSC0003DMT400060554 | Potato | nucleus | 54.77 | 51.28 |
| Bra028973.1-P | Field mustard | nucleus | 49.77 | 50.58 |
| AT4G26650.1 | Thale cress | nucleus | 52.27 | 50.55 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 77.27 | 50.07 |
| CDY11989 | Canola | nucleus | 49.09 | 50.0 |
| CDY36753 | Canola | nucleus | 49.32 | 49.89 |
| CDX94301 | Canola | nucleus | 49.77 | 49.55 |
| CDX92807 | Canola | nucleus | 50.23 | 49.11 |
| Zm00001d019086_P001 | Maize | nucleus | 59.09 | 48.87 |
| CDX89316 | Canola | endoplasmic reticulum | 49.32 | 48.55 |
| OQU83904 | Sorghum | nucleus | 49.09 | 48.0 |
| Bra019094.1-P | Field mustard | nucleus | 50.45 | 47.95 |
| CDY46689 | Canola | nucleus | 50.45 | 47.95 |
| Bra026413.1-P | Field mustard | nucleus | 45.91 | 47.75 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 45.0 | 47.71 |
| TraesCS2A01G190400.1 | Wheat | plastid | 57.27 | 47.46 |
| CDY46690 | Canola | nucleus | 46.14 | 47.43 |
| Bra024928.1-P | Field mustard | nucleus | 45.23 | 47.38 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 58.18 | 47.32 |
| CDX77783 | Canola | nucleus | 45.45 | 47.06 |
| Bra017475.1-P | Field mustard | nucleus | 45.45 | 46.84 |
| CDY41059 | Canola | nucleus | 45.45 | 46.84 |
| AT5G55550.10 | Thale cress | nucleus | 52.95 | 45.96 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 46.36 | 45.03 |
| CDY50131 | Canola | nucleus | 39.09 | 45.03 |
| Bra022145.1-P | Field mustard | nucleus | 46.59 | 44.57 |
| Bra021062.1-P | Field mustard | nucleus | 39.32 | 44.13 |
| CDY28918 | Canola | mitochondrion | 46.82 | 42.56 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 39.32 | 42.09 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 39.32 | 39.68 |
| CDX75170 | Canola | extracellular | 14.09 | 38.04 |
| CDY25957 | Canola | nucleus | 47.05 | 37.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.59 | 35.56 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 27.05 | 35.21 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 26.82 | 34.81 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 17.5 | 33.48 |
| CDY40554 | Canola | nucleus | 47.5 | 31.86 |
| GSMUA_Achr10P... | Banana | nucleus | 24.09 | 31.83 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 24.32 | 31.75 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 29.09 | 31.68 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 10.68 | 31.13 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 10.23 | 30.61 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.5 | 30.39 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 24.55 | 30.08 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 25.45 | 29.55 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 21.36 | 28.57 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 9.55 | 26.42 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 25.68 | 25.57 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 10.0 | 24.86 |
| GSMUA_Achr11P... | Banana | nucleus | 13.41 | 22.26 |
| GSMUA_Achr10P... | Banana | nucleus | 13.18 | 21.4 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 12.73 | 21.37 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 12.5 | 21.24 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 12.73 | 20.74 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 13.64 | 20.69 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 12.27 | 20.45 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 15.23 | 20.0 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 16.14 | 19.09 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 10.0 | 18.64 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 11.82 | 18.64 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 15.68 | 17.78 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 9.32 | 17.01 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 16.14 | 16.36 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 17.05 | 16.09 |
| GSMUA_Achr10P... | Banana | nucleus | 7.05 | 13.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.73 | 13.05 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 11.82 | 11.76 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 13.18 | 8.7 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P18520_001 | EnsemblPlants:GSMUA_Achr10T18520_001 | EnsemblPlantsGene:GSMUA_Achr10G18520_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002961488 | UniProt:M0RJC7 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G18520_001]
Coordinates
chr10:-:25189559..25195114
Molecular Weight (calculated)
47346.8 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.499
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDLGKLFI GGISWDTNED RLREYFGNFG EVVEAVIMKD RTTGRARGFG FVVFADPAVA EQVVMEKHLI DGRMVEAKKA VPRDDQQILN RINNSIHGSP
101: SPGHTKKIFV GGLPSTITES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DRVLFKSFHE LNGKMVEVKR AVPKELSPGP NMRSPSAGYN
201: YGLNRANNFP NGYTQGYNPS SISGYGMRMD SRLGPSSSAS NGLPSFGPSY GMGMNFEPSL IPSFGGNSSF SNNIGYGRGL SPYFSGNSTR YTSPIGYGGG
301: SANTSSVFNS MSRNAWGSGV GGSTANYTSG NLNYGDRYNN FNLSGGNFGR SNSPSAVKTT LAPSSSGYEG SYSELYGGSS VYGDPTWRSS SSELGGTGLF
401: GYGLGNAPSD VVGQSSAAYV GDYNITNRQP NRDLLHNLVL
101: SPGHTKKIFV GGLPSTITES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DRVLFKSFHE LNGKMVEVKR AVPKELSPGP NMRSPSAGYN
201: YGLNRANNFP NGYTQGYNPS SISGYGMRMD SRLGPSSSAS NGLPSFGPSY GMGMNFEPSL IPSFGGNSSF SNNIGYGRGL SPYFSGNSTR YTSPIGYGGG
301: SANTSSVFNS MSRNAWGSGV GGSTANYTSG NLNYGDRYNN FNLSGGNFGR SNSPSAVKTT LAPSSSGYEG SYSELYGGSS VYGDPTWRSS SSELGGTGLF
401: GYGLGNAPSD VVGQSSAAYV GDYNITNRQP NRDLLHNLVL
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.