Factsheet for GSMUA_Achr8P25380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	74.67	86.02
GSMUA_Achr1P09440_001	Banana	cytosol	76.52	85.55
GSMUA_Achr1P19260_001	Banana	nucleus	70.45	78.99
Os08t0320100-01	Rice	nucleus	61.21	66.29
EES01076	Sorghum	nucleus	60.95	66.19
Zm00001d030579_P001	Maize	mitochondrion	59.1	64.37
VIT_19s0015g00920.t01	Wine grape	nucleus	57.26	62.36
KRH17717	Soybean	nucleus	56.73	61.08
PGSC0003DMT400044868	Potato	nucleus	54.62	60.53
Solyc07g045240.2.1	Tomato	nucleus	54.09	59.77
VIT_12s0057g01280.t01	Wine grape	nucleus	40.63	59.69
VIT_18s0117g00150.t01	Wine grape	nucleus	55.94	59.05
TraesCS6A01G291100.1	Wheat	nucleus	53.03	58.94
TraesCS6D01G272500.1	Wheat	nucleus	53.83	58.79
Bra039380.1-P	Field mustard	nucleus	53.56	56.08
CDY43360	Canola	nucleus	53.56	56.08
TraesCS6B01G321300.2	Wheat	nucleus	54.88	55.76
AT3G13224.2	Thale cress	nucleus	52.51	55.59
CDY24201	Canola	nucleus	53.03	55.52
GSMUA_Achr9P12880_001	Banana	cytosol	28.5	46.96
GSMUA_Achr5P17700_001	Banana	cytosol	11.08	45.16
GSMUA_Achr10P...	Banana	nucleus	38.79	44.14
GSMUA_Achr7P13480_001	Banana	nucleus	38.52	43.32
PGSC0003DMT400044866	Potato	extracellular	54.35	38.58
GSMUA_Achr10P...	Banana	nucleus	23.48	35.89
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	33.25	33.96
GSMUA_Achr4P09830_001	Banana	mitochondrion	10.29	25.83
GSMUA_Achr10P...	Banana	nucleus	29.55	25.45
GSMUA_Achr1P10970_001	Banana	nucleus	29.02	25.23
GSMUA_Achr10P...	Banana	nucleus	30.08	24.78
GSMUA_Achr4P33100_001	Banana	nucleus	28.76	24.66
GSMUA_Achr6P10970_001	Banana	nucleus	32.45	24.6
GSMUA_Achr2P14710_001	Banana	cytosol	21.64	22.84
GSMUA_Achr7P00730_001	Banana	cytosol	10.82	22.65
GSMUA_Achr5P17690_001	Banana	nucleus	23.75	22.28
GSMUA_Achr3P21850_001	Banana	nucleus	15.3	22.14
GSMUA_Achr9P14920_001	Banana	plastid	10.29	22.03
GSMUA_Achr4P24260_001	Banana	cytosol	19.0	21.88
GSMUA_Achr4P32300_001	Banana	nucleus	8.44	21.77
GSMUA_Achr10P...	Banana	nucleus	15.3	21.4
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	8.97	21.38
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	15.04	21.11
GSMUA_Achr8P08440_001	Banana	nucleus	13.72	20.08
GSMUA_Achr9P12410_001	Banana	nucleus	17.68	20.0
GSMUA_Achr4P28100_001	Banana	nucleus	23.22	19.91
GSMUA_Achr5P09550_001	Banana	nucleus	19.26	19.62
GSMUA_Achr11P...	Banana	nucleus	13.72	19.62
GSMUA_Achr8P23460_001	Banana	nucleus	11.87	19.07
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	14.51	18.97
GSMUA_Achr5P05400_001	Banana	mitochondrion	12.4	17.8
GSMUA_Achr5P09540_001	Banana	nucleus	18.21	17.78
GSMUA_Achr3P02300_001	Banana	nucleus	30.87	17.23
GSMUA_Achr3P13820_001	Banana	cytosol	12.4	16.85
GSMUA_Achr6P15950_001	Banana	nucleus	19.79	16.09
GSMUA_AchrUn_...	Banana	mitochondrion	9.76	15.35
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	15.3	13.36
GSMUA_Achr10P...	Banana	nucleus	7.39	12.12
GSMUA_AchrUn_...	Banana	nucleus	13.46	11.89
GSMUA_Achr4P09210_001	Banana	nucleus	11.87	10.18
GSMUA_Achr6P24180_001	Banana	cytosol	13.19	7.5

Protein Annotations

EnsemblPlants:GSMUA_Achr8P25380_001	EnsemblPlants:GSMUA_Achr8T25380_001	EnsemblPlantsGene:GSMUA_Achr8G25380_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45276	PANTHER:PTHR45276:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002966FDA	UniProt:M0TTJ1	MapMan:35.1	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G25380_001]

Coordinates

chr8:-:29220240..29224856

Molecular Weight (calculated)

40420.9 Da

IEP (calculated)

9.422

GRAVY (calculated)

-0.645

Length

379 amino acids

Sequence
(BLAST)

001: MPYPKSLRDR WPSASFPQRP PQRNPNTRIG DICESFAMGS RMQEHDGASP AKIFVGGLPK DTTLETFVKH FEIYGEIVDS VIMKDRITNK PRGFGFITYK
101: DASVVDRVID DTHVFSGKTV EIKRTIPKGA APLKDFKTRK IFVGGIPTTL SEDEFKNFFS EFGRVEDHEI IRDHTTNRSR GFGFILFEKE KDVDDLLAKK
201: GNMIDLAGTK VEIKKAEPRK PSNAPSSAFD GEPRARHFGD SVGRYGGSYG GFGSAGGYGP SSYRTPGSFG PRPGGYGGYG NVAGDYGGGY AGYAGGLGDY
301: RAESSLGYSS RFGSYGGGFG GGYEGGYGGF GREAGGYGGS SYGGGYDSPA GYSSGLYGSR GAYSGGGGGG AGRYHPYGR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.